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[190735_at] Yeast YB81 protein like

Description F39H11.1 /REP_DB=WormBase Gene ID /WP=CE27158 /TR=P90867 /GB=CAB03080.2 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=Yeast YB81 protein like
Cluster 6grp_highest_10_10 > 47      6grp_high1_10_10 > 74      4grp_highest_8_8 > 15      4grp_high_8_8 > 14      6grp_highest_nonorm > 64      6grp_total > 64      4grp_total > 10      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 575
1 2 3 4 range
A 501
(-2.6)
P 		625.7
(-1.1)
P 		471.9
(-3)
P 		964.9
(3)
P 		493
B 448.9
(-3)
P 		605
(-1.4)
P 		570.5
(-1.7)
P 		1023.6
(3)
P 		575
C 648
(-2)
P 		579.1
(-3)
P 		619.8
(-2.4)
P 		984.3
(3)
P 		405
avr 532.6
(-3) 		603.3
(-2.1) 		554.1
(-2.7) 		990.9
(3) 		458

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 506
1 2 3 4 5 6 range
A 715.9
(-1.6)
P 		638.6
(-2.6)
P 		1089
(3)
P 		731.1
(-1.4)
P 		603.8
(-3)
P 		670.4
(-2.2)
P 		485
B 717.3
(-3)
P 		801.3
(0.7)
P 		853.6
(3)
P 		820.9
(1.6)
P 		787
(0.1)
P 		816.9
(1.4)
P 		136
C 604.9
(-2.7)
P 		774.4
(-0.2)
P 		582.9
(-3)
P 		991.6
(3)
P 		593.1
(-2.9)
P 		943.1
(2.3)
P 		409
avr 679.4
(-2.4) 		738.1
(-0.5) 		841.8
(2.8) 		847.9
(3) 		661.3
(-3) 		810.1
(1.8) 		187
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 95
1 2 3 4 range
A 182.4
(3)
P 		135.8
(-1.7)
P 		123.4
(-3)
P 		141.2
(-1.2)
P 		59
B 143.2
(-2.2)
P 		149.4
(-1.8)
P 		132.2
(-3)
P 		218.1
(3)
P 		86
C 214.5
(2.8)
P 		166.5
(-2.9)
P 		216
(3)
P 		166
(-3)
P 		50
avr 180
(3) 		150.6
(-3) 		157.2
(-1.7) 		175.1
(2) 		29

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 188
1 2 3 4 5 6 range
A 132
(-3)
P 		227.1
(2.4)
P 		237.2
(3)
P 		185.4
(0)
P 		182.2
(-0.1)
P 		163.2
(-1.2)
P 		105
B 249.6
(-0.7)
P 		266.7
(0.2)
P 		207.3
(-3)
P 		217.4
(-2.5)
P 		319.7
(3)
P 		304.6
(2.2)
P 		112
C 224.2
(-0.3)
P 		236.3
(0.2)
P 		148.4
(-3)
P 		199.4
(-1.2)
P 		191.9
(-1.4)
P 		315.7
(3)
P 		167
avr 201.9
(-2.6) 		243.4
(1.3) 		197.6
(-3) 		200.7
(-2.7) 		231.3
(0.2) 		261.2
(3) 		64
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190735_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.655
Sequence Type Exemplar sequence
Representative Public ID F39H11.1 NCBI
Target Description F39H11.1 /REP_DB=WormBase Gene ID /WP=CE27158 /TR=P90867 /GB=CAB03080.2 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=Yeast YB81 protein like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059954(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059954 NCBI Caenorhabditis elegans F39H11.1 (F39H11.1) mRNA, complete cds. 9/11 None
SNAP00000035950 ENSEMBL cdna:SNAP chromosome:CEL140:I:8704732:8705625:1 11/11 None
GENEFINDER00000035960 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:8704732:8705625:1 11/11 None
F39H11.1 ENSEMBL cdna:known chromosome:CEL140:I:8704728:8705660:1 gene:F39H11.1 9/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:8704662-8705556(+) 100.0 100.0
Public Domain and Genome References
Gene Title Yeast YB81 protein like
Ensembl F39H11.1
Entrez Gene 172675 Entrez gene
SwissProt P90867 EMBL-EBI
WormBase CE27158 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03080 Hypothetical protein F39H11.1 [Caenorhabditis elegans] ref|NP_492355.1| F39H11.1 [Caenorhabditis elegans] 2.0E-94
blast CAE66952 Hypothetical protein CBG12344 [Caenorhabditis briggsae] 5.0E-57
blast CAE66952 Hypothetical protein CBG12344 [Caenorhabditis briggsae] 1.0E-50
blast EAA09543 ENSANGP00000003608 [Anopheles gambiae str. PEST] ref|XP_314040.2| ENSANGP00000003608 [Anopheles gambiae str. PEST] 1.0E-16
Sequence
Target Sequence 
>C. ELEGANS:190735_AT
taagcattcctagatatcgcccttttattgctcattctcctcaacagatcgatgatcaag
aagaatgcgaagatggaattgacgaagaagttgaacatctgaaaaatgaaaaacaaagtg
acgaccatacatcagaaaaggcaaacagtactgaaggaagtgttgatgtggatgcgatat
ttgcagaattaactgggctagcaccgaaaccagttgtcaacgatacatcaagcaagaata
ttccaaaaactgaagaaagggtgtatccaaaatcagcagcatctgcatccaacgagtcta
caaatcagaaggtttatccgaaaaaaacggaaacagctggaacatcgtctgaaagtagca
ttgtacccggaaagaaaagagtcggcttgcttgatgctgcaaaatcactgtcgaagcgtt
ctaaaatttctgttttggagaaatctgatcgagattggaaagattttacgacgcaaaata
atttaaaagaagatttggaatctcataaccgagggaaaggcggttatctgaacaaaatgg
acttcttaaaccgagctgataatcgccagtttg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAAGCATTCCTAGATATCGCCCTTT 630 637 113 Antisense
CATTCTCCTCAACAGATCGATGATC 317 217 145 Antisense
GTGTTGATGTGGATGCGATATTTGC 543 485 272 Antisense
TGGGCTAGCACCGAAACCAGTTGTC 543 553 306 Antisense
ACCAGTTGTCAACGATACATCAAGC 147 87 321 Antisense
ATCAGCAGCATCTGCATCCAACGAG 181 29 384 Antisense
GTCTGAAAGTAGCATTGTACCCGGA 709 469 459 Antisense
AAGAGTCGGCTTGCTTGATGCTGCA 209 155 489 Antisense
GCAAAATCACTGTCGAAGCGTTCTA 384 319 511 Antisense
AATGGACTTCTTAAACCGAGCTGAT 443 161 648 Antisense
AACCGAGCTGATAATCGCCAGTTTG 352 147 661 Antisense
Sequence Source Affymetrix Proprietary Database