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[190733_s_at]

Description Y57G11C.9A /REP_DB=WormBase Gene ID /WP=CE24476 /TR=Q9U203 /GB=CAB54457.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=RNA recognition motif
Cluster 6grp_highest_10_10 > 95      6grp_high1_10_10 > 69      4grp_highest_8_8 > 54      4grp_high_8_8 > 10      6grp_highest_nonorm > 88      6grp_total > 69      4grp_total > 22      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 595
1 2 3 4 range
A 1415.5
(1.1)
P 		1423.5
(1.2)
P 		1243.2
(-3)
P 		1497.9
(3)
P 		255
B 1504
(2.6)
P 		1133.5
(-1.6)
P 		1004.2
(-3)
P 		1540
(3)
P 		536
C 1372.3
(3)
P 		944.6
(-3)
P 		990.1
(-2.4)
P 		1306.9
(2.1)
P 		428
avr 1430.6
(2.7) 		1167.2
(-1.6) 		1079.2
(-3) 		1448.3
(3) 		369

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2065
1 2 3 4 5 6 range
A 1434.6
(-0.5)
P 		1636.6
(0.1)
P 		578.1
(-3)
P 		1404.4
(-0.6)
P 		1339.9
(-0.8)
P 		2642.9
(3)
P 		2065
B 1244.3
(-0.2)
P 		1498.8
(2.4)
P 		958.2
(-3)
P 		1046.9
(-2.1)
P 		1311.2
(0.5)
P 		1561.8
(3)
P 		604
C 1388.8
(-0.4)
P 		1254.5
(-1)
P 		1010.4
(-2)
P 		780.8
(-3)
P 		1822.2
(1.4)
P 		2206.6
(3)
P 		1426
avr 1355.9
(-0.6) 		1463.3
(-0.1) 		848.9
(-3) 		1077.4
(-1.9) 		1491.1
(-0) 		2137.1
(3) 		1288
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 296
1 2 3 4 range
A 515.4
(3)
P 		309
(-1.2)
P 		325
(-0.9)
P 		219.3
(-3)
P 		296
B 479.6
(3)
P 		279.9
(-1.9)
P 		232.7
(-3)
P 		328.2
(-0.7)
P 		247
C 454.3
(3)
P 		271.6
(-1.7)
P 		345.1
(0.2)
P 		220.4
(-3)
P 		234
avr 483.1
(3) 		286.8
(-2.2) 		300.9
(-1.8) 		256
(-3) 		227

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 613
1 2 3 4 5 6 range
A 264.5
(-1.4)
P 		582.1
(2.3)
P 		125.9
(-3)
P 		356.2
(-0.3)
P 		404.3
(0.2)
P 		643.5
(3)
P 		518
B 432.9
(0.4)
P 		498.9
(1.6)
P 		232.7
(-3)
P 		277.3
(-2.2)
P 		532.7
(2.1)
P 		582.4
(3)
P 		350
C 514.8
(0.7)
P 		382.8
(-0.7)
P 		257.2
(-2)
P 		157
(-3)
P 		589.6
(1.5)
P 		738.7
(3)
P 		582
avr 404.1
(-0.3) 		487.9
(0.8) 		205.3
(-3) 		263.5
(-2.2) 		508.9
(1.1) 		654.9
(3) 		450
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 190733_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8831
Sequence Type Exemplar sequence
Representative Public ID Y57G11C.9A NCBI
Target Description Y57G11C.9A /REP_DB=WormBase Gene ID /WP=CE24476 /TR=Q9U203 /GB=CAB54457.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=RNA recognition motif
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070384(11), NM_070385(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070384 NCBI Caenorhabditis elegans Y57G11C.9b (Y57G11C.9) mRNA, complete cds. 11/11 A 
NM_070385 NCBI Caenorhabditis elegans Y57G11C.9a (Y57G11C.9) mRNA, complete cds. 11/11 A 
SNAP00000003476 ENSEMBL cdna:SNAP chromosome:CEL140:IV:14787146:14790625:1 11/11 None
GENEFINDER00000003587 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:14787146:14790625:1 11/11 None
Y57G11C.9b.2 ENSEMBL cdna:known chromosome:CEL140:IV:14787128:14791164:1 gene:Y57G11C.9 11/11 None
Y57G11C.9b.1 ENSEMBL cdna:known chromosome:CEL140:IV:14787130:14791164:1 gene:Y57G11C.9 11/11 None
Y57G11C.9a ENSEMBL cdna:known chromosome:CEL140:IV:14787146:14790756:1 gene:Y57G11C.9 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_070386 5/11 Cross Hyb Matching Probes None
Y57G11C.9c.1 5/11 Cross Hyb Matching Probes None
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
178401 3 2 NM_070384 174556_at (11), 174557_s_at (11), 186841_at (11), 190733_s_at (11)
NM_070385 174556_at (10), 174557_s_at (11), 190733_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:14787151-14790631(+) 95.55 100.0
Public Domain and Genome References
Ensembl Y57G11C.9
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB54458 Hypothetical protein Y57G11C.9b [Caenorhabditis elegans] ref|NP_502785.1| Y57G11C.9b [Caenorhabditis elegans] 0.0
blast CAB54457 Hypothetical protein Y57G11C.9a [Caenorhabditis elegans] ref|NP_502786.1| Y57G11C.9a [Caenorhabditis elegans] 0.0
blast H88904 protein Y57G11C.9 [imported] - Caenorhabditis elegans 1.0E-179
blast CAB54458 Hypothetical protein Y57G11C.9b [Caenorhabditis elegans] ref|NP_502785.1| Y57G11C.9b [Caenorhabditis elegans] 1.0E-169
blast CAB54457 Hypothetical protein Y57G11C.9a [Caenorhabditis elegans] ref|NP_502786.1| Y57G11C.9a [Caenorhabditis elegans] 1.0E-105
Protein Domains
Database ID Description E-Value
Pfam IPR000504 EMBL-EBI RNA-binding region RNP-1 (RNA recognition motif) 3.3E-11
Sequence
Target Sequence 
>C. ELEGANS:190733_S_AT
ggtgcaagtccagtttcagtatcctattcagtgccaatggaagttgaagcaactccgaag
atgattgttagagagaccccacaacctgctcaaccgccagttcaagtcaattcttattat
accactacacctattcagcaacaacagcaacaacagcaaccaataccaccacaactccct
acagcactctttggtcatctcaaagccttccaatctgctctcctctccactgtcaagtat
gagccgccagcgagaaaggaagaagacgaagctggattctctactctccgtctctcatca
ctagccactgaagatgactcggcggacgaggagaaggcgatggtgagggagttgaagctt
gcgaagctcaacgatgagcaaatgatgcgtttccatattaagaagaagcaactcgaatcg
gcttttcgcaac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGTGCAAGTCCAGTTTCAGTATCCT 183 501 1081 Antisense
TCAGTATCCTATTCAGTGCCAATGG 383 623 1096 Antisense
TTGTTAGAGAGACCCCACAACCTGC 626 707 1145 Antisense
CAACCGCCAGTTCAAGTCAATTCTT 597 185 1171 Antisense
TTATACCACTACACCTATTCAGCAA 326 679 1197 Antisense
CATCTCAAAGCCTTCCAATCTGCTC 302 213 1276 Antisense
TCTCCTCTCCACTGTCAAGTATGAG 37 611 1299 Antisense
GACGAAGCTGGATTCTCTACTCTCC 445 379 1345 Antisense
TCTCTCATCACTAGCCACTGAAGAT 189 613 1371 Antisense
CCACTGAAGATGACTCGGCGGACGA 443 273 1385 Antisense
GCAACTCGAATCGGCTTTTCGCAAC 4 321 1488 Antisense
Sequence Source Affymetrix Proprietary Database