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[190732_s_at] Yeast protein 00926 like

Description F25H8.1 /REP_DB=WormBase Gene ID /WP=CE05727 /TR=Q19789 /GB=CAA93284.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=Yeast protein 00926 like
Cluster 6grp_highest_10_10 > 67      6grp_high1_10_10 > 76      4grp_highest_8_8 > 21      4grp_high_8_8 > 15      6grp_highest_nonorm > 92      6grp_total > 76      4grp_total > 08      6grp_highest_sub > In      6grp_high1_sub > Da      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 205
1 2 3 4 range
A 246.7
(-0.7)
P 		167.9
(-3)
P 		211.9
(-1.7)
P 		372.7
(3)
P 		205
B 182.8
(-3)
P 		245.2
(-0.6)
P 		253.4
(-0.3)
P 		339.2
(3)
P 		156
C 271.8
(-3)
P 		311.4
(1.5)
P 		323.5
(2.9)
P 		324.1
(3)
P 		52
avr 233.8
(-3) 		241.5
(-2.6) 		262.9
(-1.4) 		345.3
(3) 		112

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 503
1 2 3 4 5 6 range
A 216
(-2.6)
P 		201.8
(-3)
P 		390.1
(1.7)
P 		257.8
(-1.6)
P 		308.6
(-0.3)
P 		443.3
(3)
P 		242
B 196.7
(-3)
P 		253.9
(-1.9)
P 		348.1
(-0)
P 		283.1
(-1.3)
P 		246.4
(-2)
P 		499.6
(3)
P 		303
C 170.4
(-2.7)
P 		273.7
(-1.5)
P 		147.8
(-3)
P 		308.8
(-1.1)
P 		231.4
(-2)
P 		650.3
(3)
P 		503
avr 194.4
(-3) 		243.1
(-2.1) 		295.3
(-1.2) 		283.2
(-1.4) 		262.1
(-1.8) 		531.1
(3) 		337
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 76
1 2 3 4 range
A 89.8
(3)
P 		36.5
(-3)
P 		55.4
(-0.9)
P 		54.6
(-1)
P 		53
B 58.3
(-3)
P 		60.6
(-2)
P 		58.7
(-2.8)
P 		72.3
(3)
P 		14
C 90
(0.7)
P 		89.5
(0.6)
P 		112.7
(3)
P 		54.6
(-3)
P 		58
avr 79.4
(3) 		62.2
(-2.5) 		75.6
(1.8) 		60.5
(-3) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 180
1 2 3 4 5 6 range
A 39.8
(-3)
P 		71.8
(-0.2)
P 		85
(1)
P 		65.4
(-0.7)
P 		93.1
(1.7)
P 		107.9
(3)
P 		68
B 68.4
(-3)
P 		84.5
(-2.2)
P 		84.5
(-2.2)
P 		75
(-2.7)
P 		100.1
(-1.4)
P 		186.3
(3)
P 		118
C 63.1
(-2.2)
P 		83.5
(-1.5)
P 		37.6
(-3)
P 		62.1
(-2.2)
P 		74.9
(-1.8)
P 		217.7
(3)
P 		180
avr 57.1
(-3) 		79.9
(-1.8) 		69
(-2.4) 		67.5
(-2.5) 		89.4
(-1.3) 		170.6
(3) 		114
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 190732_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9551
Sequence Type Exemplar sequence
Representative Public ID F25H8.1 NCBI
Target Description F25H8.1 /REP_DB=WormBase Gene ID /WP=CE05727 /TR=Q19789 /GB=CAA93284.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=Yeast protein 00926 like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069388(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069388 NCBI Caenorhabditis elegans F25H8.1 (F25H8.1) mRNA, complete cds. 11/11 None
SNAP00000013890 ENSEMBL cdna:SNAP chromosome:CEL140:IV:9930962:9932107:-1 11/11 None
GENEFINDER00000013898 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:9929907:9932107:-1 11/11 None
F25H8.1 ENSEMBL cdna:known chromosome:CEL140:IV:9930874:9932112:-1 gene:F25H8.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:9930967-9932113(-) 98.55 100.0
Public Domain and Genome References
Gene Title Yeast protein 00926 like
Ensembl F25H8.1
Entrez Gene 177847 Entrez gene
SwissProt Q19789 EMBL-EBI
WormBase CE05727 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:248757_AT expressed protein at
CANINE_2:CFAAFFX.16462.1.S1_AT similar to RNA (guanine-9-) methyltransferase domain containing 2 cfa
DROSOPHILA_2:1636336_AT dm
DROSGENOME1:145486_AT dm
CHICKEN:GGA.11920.2.S1_A_AT RNA (guanine-9-) methyltransferase domain containing 2 gga
HU35KSUBA:RC_AA001648_AT RNA (guanine-9-) methyltransferase domain containing 2 hs
HU35KSUBD:RC_R07185_F_AT RNA (guanine-9-) methyltransferase domain containing 2 hs
U133_X3P:HS.209927.0.A1_3P_AT RNA (guanine-9-) methyltransferase domain containing 2 hs
U133_X3P:HS.113065.0.A1_3P_AT RNA (guanine-9-) methyltransferase domain containing 2 hs
U133_X3P:242442_3P_X_AT RNA (guanine-9-) methyltransferase domain containing 2 hs
HG-U133_PLUS_2:230243_AT RNA (guanine-9-) methyltransferase domain containing 2 hs
HG-U133B:230243_AT RNA (guanine-9-) methyltransferase domain containing 2 hs
HG-U133_PLUS_2:231877_AT RNA (guanine-9-) methyltransferase domain containing 2 hs
HG-U133B:231877_AT RNA (guanine-9-) methyltransferase domain containing 2 hs
HG-U133_PLUS_2:242442_X_AT RNA (guanine-9-) methyltransferase domain containing 2 hs
HG-U133B:242442_X_AT RNA (guanine-9-) methyltransferase domain containing 2 hs
HG-U95B:46502_R_AT RNA (guanine-9-) methyltransferase domain containing 2 hs
HG-U95E:68065_AT RNA (guanine-9-) methyltransferase domain containing 2 hs
HG-U95E:81728_AT RNA (guanine-9-) methyltransferase domain containing 2 hs
HG-U95D:83789_R_AT RNA (guanine-9-) methyltransferase domain containing 2 hs
HG-U95E:86999_AT RNA (guanine-9-) methyltransferase domain containing 2 hs
MOE430A:1435035_AT RNA (guanine-9-) methyltransferase domain containing 2 mm
MOUSE430A_2:1435035_AT RNA (guanine-9-) methyltransferase domain containing 2 mm
MOUSE430_2:1435035_AT RNA (guanine-9-) methyltransferase domain containing 2 mm
MG-U74BV2:109031_AT RNA (guanine-9-) methyltransferase domain containing 2 mm
MG-U74BV2:163967_AT RNA (guanine-9-) methyltransferase domain containing 2 mm
MOE430A:1427375_AT RNA (guanine-9-) methyltransferase domain containing 2 mm
MOUSE430A_2:1427375_AT RNA (guanine-9-) methyltransferase domain containing 2 mm
MOUSE430_2:1427375_AT RNA (guanine-9-) methyltransferase domain containing 2 mm
MOE430B:1447781_S_AT RNA (guanine-9-) methyltransferase domain containing 2 mm
MOUSE430_2:1447781_S_AT RNA (guanine-9-) methyltransferase domain containing 2 mm
MU19KSUBB:TC34769_AT RNA (guanine-9-) methyltransferase domain containing 2, mRNA (cDNA clone IMAGE:5067853) mm
RAE230B:1395118_AT similar to RNA (guanine-9-) methyltransferase domain containing 2 rn
RAT230_2:1395118_AT similar to RNA (guanine-9-) methyltransferase domain containing 2 rn
YEAST_2:1778073_AT tRNA methyltransferase, methylates the N-1 position of guanosine in tRNAs Sc
Protein Similarities
Method ID Description E-Value
blast CAA93284 Hypothetical protein F25H8.1 [Caenorhabditis elegans] ref|NP_501789.1| F25H8.1 [Caenorhabditis elegans] 1.0E-148
blast CAE59965 Hypothetical protein CBG03455 [Caenorhabditis briggsae] 1.0E-114
blast XP_625003 PREDICTED: similar to Rnmtd2 protein [Apis mellifera] 6.0E-47
Protein Domains
Database ID Description E-Value
Pfam IPR007356 EMBL-EBI Protein of unknown function DUF425 8.5E-96
Sequence
Target Sequence 
>C. ELEGANS:190732_S_AT
aacgtacagttcagcaaatcggatggtgttatactgcgaacagacacagtcctgatccat
ttcaatttcatgttgtggggttcgatggaccatcgagaaaaatttatgatggtaatgagc
acaacctgaatcaagacatccatcttcaccaagaaaaattggaaaatttatttaaaccag
aggaaatagtttatttgacttctgaatctgaaaatgtcctgagcgatcttgatgatacga
aagtgtatgtaattggaggaattgtggatcataattctcaaaaaggattgtgctatcgaa
tcgctcaagaaaaaggatttggtcatgcaaaattgcctttagatgaacatcttctcatga
aatctcgacgggtactcactatcaatcaagtctatgaaattctggttcattactctgttc
acaaaaactggaaagatgctcttctttcaattattccag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACGTACAGTTCAGCAAATCGGATG 561 143 326 Antisense
GCGAACAGACACAGTCCTGATCCAT 106 287 361 Antisense
GTCCTGATCCATTTCAATTTCATGT 301 477 374 Antisense
TGTTGTGGGGTTCGATGGACCATCG 488 557 396 Antisense
GAATCAAGACATCCATCTTCACCAA 576 327 453 Antisense
GAAAATGTCCTGAGCGATCTTGATG 99 355 535 Antisense
AGGATTGTGCTATCGAATCGCTCAA 309 57 609 Antisense
GATGAACATCTTCTCATGAAATCTC 6 413 667 Antisense
ATCTCGACGGGTACTCACTATCAAT 325 33 687 Antisense
ATTCTGGTTCATTACTCTGTTCACA 212 11 724 Antisense
GATGCTCTTCTTTCAATTATTCCAG 577 413 760 Antisense
Sequence Source Affymetrix Proprietary Database