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[190730_at]

Description K02B9.2 /REP_DB=WormBase Gene ID /WP=CE06059 /TR=Q21127 /GB=CAA93509.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=MYB-related protein like
Cluster 6grp_total > 86      4grp_total > 26      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 33
1 2 3 4 range
A 2.3
(-3)
A 		9.6
(-1.4)
A 		3.1
(-2.8)
A 		30.3
(3)
A 		28
B 5.2
(-3)
A 		35.5
(3)
A 		8.2
(-2.4)
A 		14.7
(-1.1)
A 		30
C 21
(1.8)
A 		9.4
(-3)
A 		24
(3)
A 		21.7
(2.1)
A 		15
avr 9.5
(-3) 		18.2
(1.1) 		11.8
(-1.9) 		22.2
(3) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 38
1 2 3 4 5 6 range
A 2.3
(-3)
A 		16.8
(-0.7)
A 		27.2
(1)
A 		11.3
(-1.6)
A 		26.7
(0.9)
A 		40
(3)
M 		38
B 5
(-2.7)
A 		23.3
(1.6)
A 		23.8
(1.7)
A 		3.7
(-3)
A 		29.3
(3)
A 		15.6
(-0.2)
A 		26
C 2.2
(-3)
A 		3.2
(-2.8)
A 		30.1
(1.6)
A 		24.3
(0.6)
A 		26.3
(1)
A 		38.7
(3)
A 		37
avr 3.2
(-3) 		14.4
(-0.6) 		27
(2.1) 		13.1
(-0.9) 		27.4
(2.1) 		31.4
(3) 		28
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 0.8
(-3)
A 		2.1
(-0.8)
A 		0.8
(-3)
A 		4.4
(3)
A 		4
B 1.7
(-3)
A 		8.8
(3)
A 		1.9
(-2.8)
A 		3.1
(-1.8)
A 		7
C 6.9
(1.4)
A 		2.7
(-3)
A 		8.4
(3)
A 		3.7
(-1.9)
A 		6
avr 3.1
(-3) 		4.5
(3) 		3.7
(-0.4) 		3.7
(-0.4) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 0.4
(-3)
A 		6
(0.6)
A 		5.9
(0.5)
A 		2.9
(-1.4)
A 		8.1
(2)
A 		9.7
(3)
M 		9
B 1.7
(-2.6)
A 		7.7
(0.7)
A 		5.8
(-0.4)
A 		1
(-3)
A 		11.9
(3)
A 		5.8
(-0.4)
A 		11
C 0.8
(-3)
A 		1
(-2.9)
A 		7.7
(0.4)
A 		4.9
(-1)
A 		8.5
(0.8)
A 		13
(3)
A 		12
avr 1
(-3) 		4.9
(-0.2) 		6.5
(0.9) 		2.9
(-1.7) 		9.5
(3) 		9.5
(3) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190730_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17383
Sequence Type Exemplar sequence
Representative Public ID K02B9.2 NCBI
Target Description K02B9.2 /REP_DB=WormBase Gene ID /WP=CE06059 /TR=Q21127 /GB=CAA93509.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=MYB-related protein like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077917
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000032421 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:13922993:13926029:-1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_077917 8/11 Cross Hyb Matching Probes None
SNAP00000032411 8/11 Cross Hyb Matching Probes None
K02B9.2 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:13923057-13926029(-) 100.0 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA93509 Hypothetical protein K02B9.2 [Caenorhabditis elegans] ref|NP_510318.2| K02B9.2 [Caenorhabditis elegans] 0.0
blast CAA93511 Hypothetical protein K02B9.1 [Caenorhabditis elegans] ref|NP_510319.1| K02B9.1 [Caenorhabditis elegans] 2.0E-58
blast AAZ14280 proteophosphoglycan ppg4 [Leishmania major strain Friedlin] ref|XP_843162.1| proteophosphoglycan ppg4 [Leishmania major] 1.0E-9
Sequence
Target Sequence 
>C. ELEGANS:190730_AT
acgacctacttcctggagttgatccaaattatgattcaggcacatcaaccagtgagactc
cagtgctaaagttctcaataacactaaaggcgatgctttacgactactggcggacgatgg
tgcaaatgcagtatcgcggagcgaacatcaacttcctccaatccattattaacttgaatg
ccaggtctgctgctctcaacagctcaaacgccagagcctcaggctcggcggatgtgcaga
atcaaacagtgtcagcgacggtcgaaggagcagatgatgccaggtacacacaggaatcca
gtccgatgcctcggcattttttggcactcgctgcattaaaaaaaagtttggttataatac
acgcgtaccaattaattctttatctgagccgagcacatcaaagtattccaataaaaaaag
taccaattataattttcagtgccaatgtcaacgcattgagcgacttgctggcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACGACCTACTTCCTGGAGTTGATCC 225 93 2024 Antisense
GGCACATCAACCAGTGAGACTCCAG 552 535 2062 Antisense
AAGGCGATGCTTTACGACTACTGGC 47 163 2110 Antisense
TCGCGGAGCGAACATCAACTTCCTC 295 597 2157 Antisense
AACTTCCTCCAATCCATTATTAACT 380 137 2173 Antisense
AACTTGAATGCCAGGTCTGCTGCTC 141 139 2194 Antisense
CTCAGGCTCGGCGGATGTGCAGAAT 361 229 2241 Antisense
CACACAGGAATCCAGTCCGATGCCT 516 193 2310 Antisense
GATGCCTCGGCATTTTTTGGCACTC 281 415 2328 Antisense
AATTCTTTATCTGAGCCGAGCACAT 181 177 2397 Antisense
CAACGCATTGAGCGACTTGCTGGCC 638 185 2472 Antisense
Sequence Source Affymetrix Proprietary Database