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[190729_at]

Description C34C6.6 /REP_DB=WormBase Gene ID /WP=CE03054 /TR=Q18426 /GB=CAA91260.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=peroxisomal-like protein
Cluster 6grp_highest_10_10 > 76      6grp_high1_10_10 > 66      4grp_highest_8_8 > 14      4grp_high_8_8 > 14      6grp_highest_nonorm > 97      6grp_total > 57      4grp_total > 09      6grp_highest_sub > Da      6grp_cgc > 37      6grp_high1_sub > Da      6grp_cgc_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2583
1 2 3 4 range
A 755.3
(-3)
P 		1127.8
(-1.9)
P 		1175.8
(-1.7)
P 		2724.4
(3)
P 		1969
B 724.9
(-3)
P 		1057.1
(-2.2)
P 		1126.6
(-2.1)
P 		3307.7
(3)
P 		2583
C 815.6
(-3)
P 		993.6
(-2.5)
P 		1307.6
(-1.7)
P 		3095.1
(3)
P 		2280
avr 765.3
(-3) 		1059.5
(-2.2) 		1203.3
(-1.8) 		3042.4
(3) 		2277

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 954
1 2 3 4 5 6 range
A 1148
(0.3)
P 		765.3
(-2.6)
P 		1013.9
(-0.7)
P 		999.3
(-0.8)
P 		710.1
(-3)
P 		1503.4
(3)
P 		793
B 962.9
(-1.6)
P 		822.5
(-2.7)
P 		1029.1
(-1.1)
P 		993.3
(-1.4)
P 		778.1
(-3)
P 		1576.7
(3)
P 		799
C 907.7
(-1.6)
P 		850
(-1.9)
P 		884.1
(-1.7)
P 		1004.6
(-1)
P 		680
(-3)
P 		1634
(3)
P 		954
avr 1006.2
(-1) 		812.6
(-2.4) 		975.7
(-1.2) 		999.1
(-1) 		722.7
(-3) 		1571.4
(3) 		849
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 474
1 2 3 4 range
A 275
(-1.8)
P 		244.8
(-3)
P 		307.4
(-0.6)
P 		398.8
(3)
P 		154
B 231.2
(-3)
P 		261.1
(-2.6)
P 		261.1
(-2.6)
P 		704.9
(3)
P 		474
C 270
(-3)
P 		285.7
(-2.6)
P 		455.7
(1.4)
P 		521.9
(3)
P 		252
avr 258.7
(-3) 		263.9
(-2.9) 		341.4
(-1.2) 		541.9
(3) 		283

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 386
1 2 3 4 5 6 range
A 211.6
(-3)
P 		272.2
(-0.6)
P 		220.8
(-2.6)
P 		253.5
(-1.4)
P 		214.3
(-2.9)
P 		366
(3)
P 		154
B 335
(-1.5)
P 		273.8
(-2.6)
P 		249.9
(-3)
P 		263.1
(-2.8)
P 		316.1
(-1.8)
P 		587.9
(3)
P 		338
C 336.4
(-0.7)
P 		259.4
(-2)
P 		225
(-2.6)
P 		202
(-3)
P 		220
(-2.7)
P 		547
(3)
P 		345
avr 294.3
(-1.6) 		268.5
(-2.2) 		231.9
(-3) 		239.5
(-2.8) 		250.1
(-2.6) 		500.3
(3) 		268
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190729_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2661
Sequence Type Exemplar sequence
Representative Public ID C34C6.6 NCBI
Target Description C34C6.6 /REP_DB=WormBase Gene ID /WP=CE03054 /TR=Q18426 /GB=CAA91260.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=peroxisomal-like protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026848(11), NM_001026849(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026848 NCBI Caenorhabditis elegans PeRoXisome assembly factor family member (prx-5) (prx-5) mRNA, complete cds. 11/11 None
NM_001026849 NCBI Caenorhabditis elegans PeRoXisome assembly factor family member (prx-5) (prx-5) mRNA, complete cds. 11/11 None
SNAP00000033107 ENSEMBL cdna:SNAP chromosome:CEL140:II:8704748:8706644:1 11/11 None
GENEFINDER00000033115 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:8704748:8706644:1 11/11 None
C34C6.6a ENSEMBL cdna:known chromosome:CEL140:II:8704746:8706644:1 gene:C34C6.6 11/11 None
C34C6.6b ENSEMBL cdna:known chromosome:CEL140:II:8704748:8706644:1 gene:C34C6.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:8704744-8706641(+) 100.0 100.0
Public Domain and Genome References
Ensembl C34C6.6
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA91260 Hypothetical protein C34C6.6a [Caenorhabditis elegans] ref|NP_001022019.1| PeRoXisome assembly factor family member (prx-5) [Caenorhabditis elegans] 0.0
blast CAF31472 Hypothetical protein C34C6.6b [Caenorhabditis elegans] ref|NP_001022020.1| PeRoXisome assembly factor family member (prx-5) [Caenorhabditis elegans] 0.0
blast CAE65946 Hypothetical protein CBG11123 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001440 EMBL-EBI TPR repeat 3.9E-7
Pfam IPR001440 EMBL-EBI TPR repeat 1.8E-4
Pfam IPR001440 EMBL-EBI TPR repeat 4.8E-7
Pfam IPR001440 EMBL-EBI TPR repeat 4.9E-6
Pfam IPR001440 EMBL-EBI TPR repeat 3.9E-7
Pfam IPR001440 EMBL-EBI TPR repeat 1.8E-4
Pfam IPR001440 EMBL-EBI TPR repeat 4.8E-7
Pfam IPR001440 EMBL-EBI TPR repeat 4.9E-6
Sequence
Target Sequence 
>C. ELEGANS:190729_AT
atggatgtcttcttacttgggttcaaactcgactcaagtgacaaccacacctccactcta
ctcttcatttctggacagtgacacttttaatcgagttgaggctagattcttggatgctgc
tcggcaacaaggagcaactccagatccagatcttcaaaatgctctcggagttttatacaa
cttgaatcgcaattttgcaagagctgtcgactctctcaagttggcgatctccaaaaatcc
aactgatgctcgtctctggaatcgtcttggtgctacgttagccaatggtgaccacacagc
tgaagccatttcagcatatcgagaagctttgaaattgtatccaacatatgtcagagcaag
atacaatttgggaatatcttgtatgcaattatcatcttatgatgaagctttgaaacattt
tttatctgcattagaattgcaaaaaggaggaaatgatgcatctggtatttggacaactat
gagatcagcagcaatccgaacatcgaatgtccctgacaatttactgagagca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGGATGTCTTCTTACTTGGGTTCA 513 49 945 Antisense
TCGACTCAAGTGACAACCACACCTC 550 601 973 Antisense
TCCACTCTACTCTTCATTTCTGGAC 237 589 996 Antisense
AGGCTAGATTCTTGGATGCTGCTCG 589 53 1043 Antisense
GATCTTCAAAATGCTCTCGGAGTTT 111 421 1093 Antisense
CAAGAGCTGTCGACTCTCTCAAGTT 457 185 1142 Antisense
AATCCAACTGATGCTCGTCTCTGGA 598 167 1180 Antisense
GAATCGTCTTGGTGCTACGTTAGCC 536 327 1203 Antisense
GTGACCACACAGCTGAAGCCATTTC 689 481 1232 Antisense
ATCCGAACATCGAATGTCCCTGACA 25 39 1438 Antisense
TGTCCCTGACAATTTACTGAGAGCA 705 557 1452 Antisense
Sequence Source Affymetrix Proprietary Database