[Home] | [Total List]

[190727_at] UNC-7 like

Description C36H8.2 /REP_DB=WormBase Gene ID /WP=CE24831 /GEN=inx-6 /TR=SW:Q9U3N4 /GB=CAB60997.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=UNC-7 like
Cluster 6grp_highest_10_10 > 31      6grp_high1_10_10 > 13      4grp_high_8_8 > 33      6grp_highest_nonorm > 60      6grp_total > 24      4grp_total > 46      6grp_highest_sub > De      6grp_cgc > 31      6grp_high1_sub > De      6grp_cgc_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 444
1 2 3 4 range
A 512.6
(3)
P 		261
(-1.9)
P 		206.7
(-3)
P 		238.3
(-2.4)
A 		306
B 457.4
(3)
P 		249.2
(-0.9)
P 		146.7
(-2.8)
P 		133.2
(-3)
P 		324
C 576.8
(3)
P 		283.1
(-1.1)
P 		147.6
(-3)
P 		226.2
(-1.9)
P 		429
avr 515.6
(3) 		264.4
(-1.3) 		167
(-3) 		199.2
(-2.4) 		349

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 596
1 2 3 4 5 6 range
A 639.5
(3)
P 		608.7
(2.7)
P 		293.1
(-0.7)
P 		256.4
(-1.1)
P 		153.9
(-2.2)
P 		79.8
(-3)
P 		560
B 609
(3)
P 		548
(2.4)
P 		421.6
(1)
P 		169.3
(-1.7)
P 		172
(-1.6)
P 		43.8
(-3)
P 		565
C 523.4
(2.6)
P 		557.6
(3)
P 		359.5
(0.5)
P 		317.9
(-0.1)
P 		157.7
(-2.1)
P 		87.3
(-3)
P 		470
avr 590.6
(3) 		571.4
(2.8) 		358.1
(0.3) 		247.9
(-1) 		161.2
(-2) 		70.3
(-3) 		520
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 163
1 2 3 4 range
A 186.6
(3)
P 		56.7
(-2.1)
P 		54
(-2.2)
P 		34.9
(-3)
A 		152
B 145.9
(3)
P 		61.5
(-1.3)
P 		34
(-2.7)
P 		28.4
(-3)
P 		118
C 190.9
(3)
P 		81.4
(-1.3)
P 		51.5
(-2.5)
P 		38.1
(-3)
P 		153
avr 174.5
(3) 		66.5
(-1.6) 		46.5
(-2.5) 		33.8
(-3) 		141

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 200
1 2 3 4 5 6 range
A 117.9
(-0)
P 		216.5
(3)
P 		63.8
(-1.6)
P 		65
(-1.6)
P 		46.4
(-2.2)
P 		19.4
(-3)
P 		197
B 211.9
(3)
P 		182.4
(2.1)
P 		102.4
(-0.4)
P 		44.8
(-2.1)
P 		69.9
(-1.4)
P 		16.4
(-3)
P 		196
C 194
(3)
P 		170.1
(2.1)
P 		91.5
(-0.7)
P 		63.9
(-1.7)
P 		51
(-2.2)
P 		29.2
(-3)
P 		165
avr 174.6
(2.5) 		189.7
(3) 		85.9
(-0.7) 		57.9
(-1.7) 		55.8
(-1.8) 		21.7
(-3) 		168
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190727_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8675
Sequence Type Exemplar sequence
Representative Public ID C36H8.2 NCBI
Target Description C36H8.2 /REP_DB=WormBase Gene ID /WP=CE24831 /GEN=inx-6 /TR=SW:Q9U3N4 /GB=CAB60997.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=UNC-7 like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070034(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070034 NCBI Caenorhabditis elegans INneXin family member (inx-6) (inx-6) mRNA, complete cds. 11/11 None
SNAP00000044131 ENSEMBL cdna:SNAP chromosome:CEL140:IV:12746588:12749509:1 11/11 None
GENEFINDER00000044134 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:12746588:12752014:1 11/11 None
C36H8.2 ENSEMBL cdna:known chromosome:CEL140:IV:12746555:12749674:1 gene:C36H8.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:12746593-12749515(+) 100.0 100.0
Public Domain and Genome References
Gene Title UNC-7 like
Gene Symbol inx-6
Ensembl C36H8.2
Entrez Gene 178231 Entrez gene
SwissProt Q9U3N4 EMBL-EBI
WormBase CE24831 Wormbase
Functional Annotations
Ortholog
ID Title Organism
DROSOPHILA_2:1630680_AT dm
DROSGENOME1:145349_AT dm
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5921 gap junction inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB60997 Hypothetical protein C36H8.2 [Caenorhabditis elegans] ref|NP_502435.1| INneXin family member (inx-6) [Caenorhabditis elegans] sp|Q9U3N4|INX6_CAEEL Innexin-6 (Protein opu-6) 0.0
blast AAB09672 transmembrane protein 0.0
blast CAE74550 Hypothetical protein CBG22306 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000990 EMBL-EBI Innexin 1.6E-33
Pfam IPR000990 EMBL-EBI Innexin 9.1E-36
Pfam IPR000990 EMBL-EBI Innexin 2.0E-35
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_502435.1 4 30-52,104-126,188-210,279-301
C36H8.2 4 30-52,104-126,188-210,279-301
SNAP00000044131 4 30-52,104-126,188-210,279-301
GENEFINDER00000044134 4 30-52,104-126,188-210,279-301
Sequence
Target Sequence 
>C. ELEGANS:190727_AT
gaagccgaaacatggcacttttctataccctgtcaactgtatggcaggcagtgaatgctt
ggattcaattttatattctcactcaacttctcgactcatcgatttacaccctttgggggc
catcgattcttggtgatttgcttcaaggaaatgattggcagactactggacattttccaa
gaattgttcattgtgattttaatagaagacggccggctagtgtacagctggacacagttc
tctgcgttctcactctcaacatctactacgagaagctcttcatcttcctctggttctggt
tggtcttcgtcgcagttgtatcaactgtcaactgcttcaaatggatctattacctgtgta
ataagacaaaggcccagaaaacaataaaaaattacctatcaactgctccaataaagtcaa
caatcagtgatgatcagttcttcagtgcacttg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGCCGAAACATGGCACTTTTCTA 695 343 563 Antisense
ACTTTTCTATACCCTGTCAACTGTA 241 103 579 Antisense
CAATTTTATATTCTCACTCAACTTC 91 181 628 Antisense
CACTCAACTTCTCGACTCATCGATT 564 197 642 Antisense
TCGATTTACACCCTTTGGGGGCCAT 353 601 661 Antisense
TGGGGGCCATCGATTCTTGGTGATT 398 551 676 Antisense
GGCCGGCTAGTGTACAGCTGGACAC 259 543 773 Antisense
TGGTCTTCGTCGCAGTTGTATCAAC 265 549 863 Antisense
GTATCAACTGTCAACTGCTTCAAAT 557 453 880 Antisense
AAATTACCTATCAACTGCTCCAATA 532 115 951 Antisense
GATGATCAGTTCTTCAGTGCACTTG 139 411 991 Antisense
Sequence Source Affymetrix Proprietary Database