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[190725_at] Zinc finger protein HRX

Description K09F5.5 /REP_DB=WormBase Gene ID /WP=CE02822 /TR=Q21404 /GB=AAB52674.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=Zinc finger protein HRX
Cluster 6grp_total > 88      4grp_total > 11      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 116
1 2 3 4 range
A 46.5
(-1.7)
A 		63.8
(-0.5)
A 		25.6
(-3)
A 		119
(3)
A 		93
B 45.1
(-1.3)
A 		36
(-1.8)
A 		16.2
(-3)
A 		117.9
(3)
A 		102
C 18.1
(-2.9)
A 		37.4
(-1.9)
A 		16.3
(-3)
A 		132.2
(3)
A 		116
avr 36.6
(-2) 		45.7
(-1.5) 		19.4
(-3) 		123
(3) 		104

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 103
1 2 3 4 5 6 range
A 41
(-1.9)
A 		31
(-3)
A 		38.7
(-2.2)
A 		38.5
(-2.2)
A 		85.6
(3)
A 		68.6
(1.1)
A 		55
B 30.4
(-1.4)
A 		24.5
(-1.8)
A 		40.3
(-0.7)
A 		7.5
(-3)
A 		41.6
(-0.6)
A 		92.3
(3)
A 		85
C 48.5
(-0.8)
A 		15.5
(-2.8)
A 		20.8
(-2.4)
A 		11.6
(-3)
A 		57.9
(-0.2)
A 		110.3
(3)
A 		99
avr 40
(-1.2) 		23.7
(-2.6) 		33.3
(-1.8) 		19.2
(-3) 		61.7
(0.6) 		90.4
(3) 		71
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 21
1 2 3 4 range
A 16.9
(2.7)
A 		13.8
(1)
A 		6.7
(-3)
A 		17.4
(3)
A 		11
B 14.4
(-0)
A 		8.9
(-1.6)
A 		3.8
(-3)
A 		25.1
(3)
A 		21
C 6
(-2.9)
A 		10.8
(-1.2)
A 		5.7
(-3)
A 		22.3
(3)
A 		17
avr 12.4
(-0.4) 		11.2
(-0.9) 		5.4
(-3) 		21.6
(3) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 35
1 2 3 4 5 6 range
A 7.6
(-3)
A 		11
(-1.9)
A 		8.4
(-2.7)
A 		9.8
(-2.3)
A 		25.8
(3)
A 		16.7
(-0)
A 		18
B 10.6
(-1.4)
A 		8.2
(-1.9)
A 		9.8
(-1.6)
A 		2
(-3)
A 		16.9
(-0.2)
A 		34.4
(3)
A 		32
C 18
(-0.3)
A 		4.7
(-2.6)
A 		5.3
(-2.5)
A 		2.3
(-3)
A 		18.7
(-0.2)
A 		36.9
(3)
A 		35
avr 12.1
(-1.2) 		8
(-2.2) 		7.8
(-2.2) 		4.7
(-3) 		20.5
(0.9) 		29.3
(3) 		25
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190725_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16059
Sequence Type Exemplar sequence
Representative Public ID K09F5.5 NCBI
Target Description K09F5.5 /REP_DB=WormBase Gene ID /WP=CE02822 /TR=Q21404 /GB=AAB52674.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=Zinc finger protein HRX
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076905(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076905 NCBI Caenorhabditis elegans K09F5.5 (K09F5.5) mRNA, complete cds. 11/11 None
GENEFINDER00000026497 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:7733250:7736087:-1 11/11 None
K09F5.5 ENSEMBL cdna:known chromosome:CEL140:X:7733278:7736087:-1 gene:K09F5.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000026493 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:7733248-7736086(-) 100.0 100.0
Public Domain and Genome References
Gene Title Zinc finger protein HRX
Ensembl K09F5.5
Entrez Gene 187229 Entrez gene
SwissProt Q21404 EMBL-EBI
WormBase CE35742 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_509306 K09F5.5 [Caenorhabditis elegans] gb|AAB52674.2| Hypothetical protein K09F5.5 [Caenorhabditis elegans] 0.0
blast B87754 protein C43E11.3 [imported] - Caenorhabditis elegans 1.0E-37
blast CAE66816 Hypothetical protein CBG12181 [Caenorhabditis briggsae] 4.0E-36
Protein Domains
Database ID Description E-Value
Pfam IPR001214 EMBL-EBI Nuclear protein SET 5.6E-49
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000026497 1 394-416
Sequence
Target Sequence 
>C. ELEGANS:190725_AT
gatcacttttgactatggaacctccttcagaaatgaccaaccatgtcaatgtggggaagc
agcatgtagaggttggattggaaaaccatcaacatctgaagttccaaaggatgtgtccaa
agagcttaaaaagagaggaagaaaaccgaaaatggatcccacagcacccatatcaacaac
gagcacaggaggtggagacaaggggaaattaagtggcacaattccggtgccaaaatccag
gagaggaagaaaaagaaagaccgatgtcacagctcctgttccactagccacaaaaaccaa
gagacatagtcccccagccgaaaatgagtcagaagacaaagaaaatgttaaaccaccaag
cgaagaagacattaccaacgccatgaataatcttttaaataagacatacgataatcaaaa
tgggtctaaactcgagactgtagccactcgtggactttcaaacggtttacatgcttcact
acagaactgccaaacttgccttcacaatcctcatctttgccattttatcttca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATCACTTTTGACTATGGAACCTCC 88 421 639 Antisense
GGAACCTCCTTCAGAAATGACCAAC 641 527 655 Antisense
CACAGCACCCATATCAACAACGAGC 709 195 798 Antisense
CACAATTCCGGTGCCAAAATCCAGG 598 189 855 Antisense
AAAGACCGATGTCACAGCTCCTGTT 373 123 894 Antisense
TCCTGTTCCACTAGCCACAAAAACC 407 593 912 Antisense
GTCCCCCAGCCGAAAATGAGTCAGA 313 475 947 Antisense
GACTGTAGCCACTCGTGGACTTTCA 43 375 1074 Antisense
AAACGGTTTACATGCTTCACTACAG 117 127 1098 Antisense
TACAGAACTGCCAAACTTGCCTTCA 91 643 1118 Antisense
CCTCATCTTTGCCATTTTATCTTCA 144 269 1147 Antisense
Sequence Source Affymetrix Proprietary Database