[Home] | [Total List]

[190723_s_at] acyl-CoA dehydrongenase

Description T10E9.9 /REP_DB=WormBase Gene ID /WP=CE13559 /TR=O01607 /GB=AAB52476.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation /DEF=acyl-CoA dehydrongenase
Cluster 6grp_high1_10_10 > 77      6grp_total > 78      4grp_total > 29      6grp_high1_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 65
1 2 3 4 range
A 64.3
(3)
P 		37.6
(-3)
A 		57.3
(1.4)
P 		46.3
(-1)
A 		27
B 72.3
(2.2)
P 		77.3
(2.7)
A 		18.9
(-3)
A 		80.1
(3)
A 		61
C 61.6
(-0.3)
M 		84.3
(3)
A 		43.5
(-3)
P 		83
(2.8)
P 		41
avr 66.1
(2.3) 		66.4
(2.3) 		39.9
(-3) 		69.8
(3) 		30

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 249
1 2 3 4 5 6 range
A 55.3
(-2.8)
A 		60.6
(-2.6)
P 		48.2
(-3)
A 		67.2
(-2.4)
P 		116.4
(-1)
P 		252.4
(3)
P 		204
B 54.4
(-3)
P 		74.1
(-2.5)
P 		57.1
(-2.9)
P 		78.5
(-2.4)
P 		107.5
(-1.6)
P 		281.6
(3)
P 		227
C 69.7
(-1.7)
P 		82.5
(-1.3)
P 		32.4
(-3)
P 		58.2
(-2.1)
A 		124.8
(0.1)
P 		210.8
(3)
P 		178
avr 59.8
(-2.6) 		72.4
(-2.2) 		45.9
(-3) 		68
(-2.3) 		116.2
(-0.9) 		248.3
(3) 		202
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 23.4
(3)
P 		8.2
(-2.5)
A 		15
(-0)
P 		6.8
(-3)
A 		17
B 23.1
(3)
P 		19.1
(1.7)
A 		4.4
(-3)
A 		17.1
(1.1)
A 		19
C 20.4
(0.8)
M 		24.2
(3)
A 		15.2
(-2.3)
P 		14
(-3)
P 		10
avr 22.3
(3) 		17.2
(0.2) 		11.5
(-3) 		12.6
(-2.4) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 97
1 2 3 4 5 6 range
A 10.2
(-3)
A 		21.6
(-1.7)
P 		10.5
(-3)
A 		17
(-2.2)
P 		35.1
(-0.1)
P 		61.5
(3)
P 		51
B 18.9
(-2.7)
P 		24.7
(-2.3)
P 		13.9
(-3)
P 		20.8
(-2.5)
P 		43.7
(-1)
P 		105
(3)
P 		91
C 25.8
(-1.3)
P 		25.2
(-1.4)
P 		8.2
(-3)
P 		11.7
(-2.7)
A 		40.4
(0.1)
P 		70.6
(3)
P 		62
avr 18.3
(-2.3) 		23.8
(-1.9) 		10.9
(-3) 		16.5
(-2.5) 		39.7
(-0.5) 		79
(3) 		68
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 190723_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2474
Sequence Type Exemplar sequence
Representative Public ID T10E9.9 NCBI
Target Description T10E9.9 /REP_DB=WormBase Gene ID /WP=CE13559 /TR=O01607 /GB=AAB52476.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation /DEF=acyl-CoA dehydrongenase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059485(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059485 NCBI Caenorhabditis elegans T10E9.9 (T10E9.9) mRNA, complete cds. 9/11 None
T10E9.9 ENSEMBL cdna:known chromosome:CEL140:I:6554811:6556724:-1 gene:T10E9.9 9/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:6554790-6556156(-) 100.0 100.0
Public Domain and Genome References
Gene Title acyl-CoA dehydrongenase
Ensembl T10E9.9
Entrez Gene 172367 Entrez gene
SwissProt O01607 EMBL-EBI
WormBase CE34367 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3995 acyl-CoA dehydrogenase activity inferred from electronic annotation QuickGO AmiGO
16491 oxidoreductase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB52476 Hypothetical protein T10E9.9 [Caenorhabditis elegans] ref|NP_491886.2| T10E9.9 [Caenorhabditis elegans] 0.0
blast CAE67225 Hypothetical protein CBG12664 [Caenorhabditis briggsae] 1.0E-137
blast AAK21433 Hypothetical protein K06A5.6 [Caenorhabditis elegans] ref|NP_491859.1| K06A5.6 [Caenorhabditis elegans] 1.0E-133
Protein Families
Method ID Description E-Value
ec ACDL_HUMAN (P28330) Acyl-CoA dehydrogenase, long-chain specific, mitochondrial precursor (EC 1.3.99.13) (LCAD) 1.0E-122
Protein Domains
Database ID Description E-Value
Pfam IPR006090 EMBL-EBI Acyl-CoA dehydrogenase, C-terminal 3.1E-43
Pfam IPR006091 EMBL-EBI Acyl-CoA dehydrogenase, central domain 1.3E-57
Pfam IPR006092 EMBL-EBI Acyl-CoA dehydrogenase, N-terminal 1.9E-27
Sequence
Target Sequence 
>C. ELEGANS:190723_S_AT
tgtatcgttttttcatcgtctcttctatccaagacattattttgctgaaaaaattattga
aaaacatgaaatacatcaaggactcaaaggaaatcaatggaagcaggcatatggggttac
tgtattccagttattttattcctggcgagaacgggggtacagtagaggacaaattgggag
ttcgttcatcttctacgtgcccacttcattttgataatgtacgcgttcacaagtcggcaa
ttcttggagaatttggaaaaggttacaagtacgcaattgaatatttgaatgctggtcgta
tcggaattggagctcaaatgcttggattagctcaaggatgttttgatcagacaattccat
atcttcaacaaagagaacagtttgggcagagaattattgatttccagggaatgcaacatc
aaattgctcaagtcagaactgaaatcgaagctgctcgtctgttggtttacaatgctgctc
gtatgaagcaacacggattaccatttgttcgtgaggcagcaatggcgaagctctttgcat
caccaaagaattccccgtcgagaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGTATCGTTTTTTCATCGTCTCTTC 128 561 527 Antisense
CATCGTCTCTTCTATCCAAGACATT 493 211 540 Antisense
AATTGGGAGTTCGTTCATCTTCTAC 449 179 698 Antisense
TTCTACGTGCCCACTTCATTTTGAT 465 691 717 Antisense
TACGCGTTCACAAGTCGGCAATTCT 547 647 746 Antisense
GAATGCTGGTCGTATCGGAATTGGA 437 331 813 Antisense
AAATCGAAGCTGCTCGTCTGTTGGT 624 113 968 Antisense
GTCTGTTGGTTTACAATGCTGCTCG 471 471 983 Antisense
GATTACCATTTGTTCGTGAGGCAGC 620 429 1022 Antisense
AATGGCGAAGCTCTTTGCATCACCA 111 163 1047 Antisense
TCACCAAAGAATTCCCCGTCGAGAA 622 625 1066 Antisense
Sequence Source Affymetrix Proprietary Database