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[190722_at] glucuronosyltransferase

Description F10D2.7 /REP_DB=WormBase Gene ID /WP=CE09318 /TR=O16916 /GB=AAC48237.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=glucuronosyltransferase
Cluster 6grp_total > 90      4grp_total > 18      6grp_cgc > 96      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 58
1 2 3 4 range
A 23.9
(-1.4)
P 		26.2
(-0.6)
A 		36
(3)
A 		19.5
(-3)
A 		17
B 18
(1.6)
A 		22.6
(3)
A 		2.6
(-3)
A 		17.5
(1.5)
A 		20
C 4
(-3)
A 		17.9
(-1.5)
A 		12.6
(-2.1)
A 		60.2
(3)
P 		56
avr 15.3
(-3) 		22.2
(-0.6) 		17.1
(-2.4) 		32.4
(3) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 60
1 2 3 4 5 6 range
A 0.6
(-3)
A 		3.4
(-2.6)
A 		23.6
(0.5)
A 		39.6
(3)
A 		28
(1.2)
P 		36.3
(2.5)
P 		39
B 25.6
(0.1)
P 		41.6
(3)
P 		22.8
(-0.4)
A 		28
(0.6)
A 		28.6
(0.7)
A 		8
(-3)
A 		34
C 20.4
(-1.1)
A 		53.1
(2.2)
P 		1.4
(-3)
A 		61
(3)
A 		5.4
(-2.6)
A 		24.2
(-0.7)
P 		60
avr 15.5
(-3) 		32.7
(0.8) 		15.9
(-2.9) 		42.9
(3) 		20.7
(-1.9) 		22.8
(-1.4) 		27
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 8.7
(2.4)
P 		5.7
(-0.4)
A 		9.4
(3)
A 		2.9
(-3)
A 		7
B 5.8
(3)
A 		5.6
(2.8)
A 		0.6
(-3)
A 		3.7
(0.6)
A 		5
C 1.3
(-3)
A 		5.2
(-0.3)
A 		4.4
(-0.9)
A 		10.1
(3)
P 		9
avr 5.3
(0.8) 		5.5
(2.3) 		4.8
(-3) 		5.6
(3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 0.1
(-3)
A 		1.2
(-2.3)
A 		5.1
(0)
A 		10
(3)
A 		8.4
(2)
P 		8.8
(2.3)
P 		10
B 8.9
(0.3)
P 		13.8
(3)
P 		5.5
(-1.6)
A 		7.4
(-0.6)
A 		11.6
(1.8)
A 		3
(-3)
A 		11
C 7.6
(-0.2)
A 		16.2
(3)
P 		0.3
(-3)
A 		12.3
(1.5)
A 		1.8
(-2.4)
A 		8.1
(-0.1)
P 		16
avr 5.5
(-1.3) 		10.4
(3) 		3.6
(-3) 		9.9
(2.6) 		7.3
(0.3) 		6.6
(-0.4) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190722_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11801
Sequence Type Exemplar sequence
Representative Public ID F10D2.7 NCBI
Target Description F10D2.7 /REP_DB=WormBase Gene ID /WP=CE09318 /TR=O16916 /GB=AAC48237.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=glucuronosyltransferase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072411(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072411 NCBI Caenorhabditis elegans F10D2.7 (glucuronosyltransferase) mRNA, complete cds. 11/11 None
GENEFINDER00000033821 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:7144863:7150062:-1 10/11 None
F10D2.7 ENSEMBL cdna:known chromosome:CEL140:V:7148248:7150062:-1 gene:F10D2.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000033808 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7148248-7150063(-) 100.0 100.0
Public Domain and Genome References
Gene Title glucuronosyltransferase
Gene Symbol ugt-38
Ensembl F10D2.7
Entrez Gene 184294 Entrez gene
SwissProt O16916 EMBL-EBI
WormBase CE09318 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
8152 metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
16758 transferase activity, transferring hexosyl groups inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_504812 F10D2.7 [Caenorhabditis elegans] gb|AAC48237.1| Hypothetical protein F10D2.7 [Caenorhabditis elegans] 0.0
blast NP_504816 F10D2.2a [Caenorhabditis elegans] gb|AAC48233.2| Hypothetical protein F10D2.2a [Caenorhabditis elegans] 0.0
blast CAE72010 Hypothetical protein CBG19091 [Caenorhabditis briggsae] 0.0
blast NP_504811 F10D2.6 [Caenorhabditis elegans] gb|AAC48236.2| Hypothetical protein F10D2.6 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 1.5E-15
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 3.1E-14
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 1.1E-12
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504812.1 1 483-505
F10D2.7 1 483-505
GENEFINDER00000033821 2 4-26,486-508
Sequence
Target Sequence 
>C. ELEGANS:190722_AT
cttactcacgccggacttggtagtatcactgaactcagctacttgggtaaacctgctatc
ttgtgcccacaactattcgaccaaatgagaaatactaaaatgcttgtccgtcacaatgga
tctatcgagctatcgaaatatgatctgggaaagtctgagaaaattattgaagcttttcaa
gcaattttgtttgattcttcatatgcaaaaaatgctcagaaattagcagaacagcttgag
aatcagccaattaaaccgaaagaaatgatggttaaacatgctgaatatgcagccagattt
gggcgtctaccatcactggatccatactcgagaaaaatgtctttcgttgaatatttcttg
cttgacgtcgcagccatttgtgtttttatactgacatttgtagtttttgtagtaacgaaa
ttagtacagtctttat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTTACTCACGCCGGACTTGGTAGTA 251 207 1114 Antisense
GACTTGGTAGTATCACTGAACTCAG 450 323 1127 Antisense
CACTGAACTCAGCTACTTGGGTAAA 709 197 1140 Antisense
GGGTAAACCTGCTATCTTGTGCCCA 310 497 1158 Antisense
ATCTTGTGCCCACAACTATTCGACC 457 31 1171 Antisense
GAGAAATACTAAAATGCTTGTCCGT 411 355 1200 Antisense
GTCACAATGGATCTATCGAGCTATC 425 463 1223 Antisense
AACATGCTGAATATGCAGCCAGATT 550 137 1388 Antisense
TGACGTCGCAGCCATTTGTGTTTTT 706 569 1476 Antisense
GCCATTTGTGTTTTTATACTGACAT 67 281 1486 Antisense
GTAACGAAATTAGTACAGTCTTTAT 350 457 1525 Antisense
Sequence Source Affymetrix Proprietary Database