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[190714_at] MYB transforming protein

Description D1081.8 /REP_DB=WormBase Gene ID /WP=CE05540 /TR=Q21119 /GB=CAB00038.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=MYB transforming protein
Cluster 6grp_highest_10_10 > 83      6grp_high1_10_10 > 47      4grp_highest_8_8 > 37      4grp_high_8_8 > 01      6grp_highest_nonorm > 73      6grp_total > 58      4grp_total > 07      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 292
1 2 3 4 range
A 562.8
(3)
P 		354.3
(-3)
P 		387.7
(-2)
P 		462.6
(0.1)
P 		209
B 453.2
(-1)
P 		354.4
(-3)
P 		411.7
(-1.8)
P 		645.8
(3)
P 		291
C 503.1
(1.9)
P 		389.5
(-3)
P 		527.8
(3)
P 		518.5
(2.6)
P 		138
avr 506.4
(1.8) 		366.1
(-3) 		442.4
(-0.4) 		542.3
(3) 		176

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 326
1 2 3 4 5 6 range
A 587
(0.6)
P 		509.3
(-1)
P 		454.3
(-2.2)
P 		508.8
(-1)
P 		415.6
(-3)
P 		698.2
(3)
P 		283
B 567.2
(2.7)
P 		463
(-1.7)
P 		536.6
(1.4)
P 		493.2
(-0.4)
P 		431.4
(-3)
P 		575.4
(3)
P 		144
C 741.6
(3)
P 		432.3
(-3)
P 		520.5
(-1.3)
P 		462
(-2.4)
P 		558.6
(-0.5)
P 		640.7
(1)
P 		309
avr 631.9
(2.8) 		468.2
(-3) 		503.8
(-1.7) 		488
(-2.3) 		468.5
(-3) 		638.1
(3) 		170
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 137
1 2 3 4 range
A 204.9
(3)
P 		76.9
(-2.6)
P 		101.4
(-1.5)
P 		67.7
(-3)
P 		137
B 144.5
(3)
P 		87.5
(-3)
P 		95.4
(-2.2)
P 		137.6
(2.3)
P 		57
C 166.5
(1.9)
P 		112
(-1.5)
P 		184
(3)
P 		87.4
(-3)
P 		97
avr 172
(3) 		92.1
(-3) 		126.9
(-0.4) 		97.6
(-2.6) 		80

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 182
1 2 3 4 5 6 range
A 108.2
(-2.3)
P 		181.1
(3)
P 		98.9
(-3)
P 		129
(-0.8)
P 		125.4
(-1.1)
P 		170
(2.2)
P 		82
B 197.4
(1.8)
P 		154.1
(-1.3)
P 		130.3
(-3)
P 		130.6
(-3)
P 		175.3
(0.2)
P 		214.6
(3)
P 		84
C 274.9
(3)
P 		131.9
(-1.7)
P 		132.5
(-1.7)
P 		92.9
(-3)
P 		180.8
(-0.1)
P 		214.5
(1)
P 		182
avr 193.5
(2.5) 		155.7
(-0.2) 		120.6
(-2.8) 		117.5
(-3) 		160.5
(0.1) 		199.7
(3) 		82
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190714_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.995
Sequence Type Exemplar sequence
Representative Public ID D1081.8 NCBI
Target Description D1081.8 /REP_DB=WormBase Gene ID /WP=CE05540 /TR=Q21119 /GB=CAB00038.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=MYB transforming protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059902(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059902 NCBI Caenorhabditis elegans D1081.8 (D1081.8) mRNA, complete cds. 11/11 None
SNAP00000001139 ENSEMBL cdna:SNAP chromosome:CEL140:I:8501271:8503749:1 11/11 None
GENEFINDER00000001158 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:8501271:8503749:1 11/11 None
D1081.8.2 ENSEMBL cdna:known chromosome:CEL140:I:8499414:8503963:1 gene:D1081.8 11/11 None
D1081.8.1 ENSEMBL cdna:known chromosome:CEL140:I:8499416:8504427:1 gene:D1081.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:8499361-8503680(+) 100.0 100.0
Public Domain and Genome References
Gene Title MYB transforming protein
Ensembl D1081.8
Entrez Gene 172639 Entrez gene
SwissProt Q21119 EMBL-EBI
WormBase CE05540 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:264709_AT myb family transcription factor at
ATGENOME1:17542_S_AT myb family transcription factor at
CANINE:1604161_AT similar to CDC5-like cfa
CANINE:1596607_AT similar to CDC5-like cfa
CANINE_2:CFA.163.1.A1_S_AT similar to CDC5-like cfa
CANINE_2:CFA.17896.1.S1_S_AT similar to CDC5-like cfa
CANINE_2:CFA.20147.1.S1_S_AT similar to CDC5-like cfa
DROSOPHILA_2:1634212_AT dm
DROSGENOME1:147928_AT dm
CHICKEN:GGA.10444.1.S1_S_AT CDC5 cell division cycle 5-like (S. pombe) gga
CHICKEN:GGA.19042.1.S1_S_AT CDC5 cell division cycle 5-like (S. pombe) gga
CHICKEN:GGAAFFX.25036.1.S1_AT CDC5 cell division cycle 5-like (S. pombe) gga
HG-U133A:209055_S_AT CDC5 cell division cycle 5-like (S. pombe) hs
HG-U133A_2:209055_S_AT CDC5 cell division cycle 5-like (S. pombe) hs
HG-U133_PLUS_2:209055_S_AT CDC5 cell division cycle 5-like (S. pombe) hs
HG-U95AV2:1621_AT CDC5 cell division cycle 5-like (S. pombe) hs
HC-G110:1621_AT CDC5 cell division cycle 5-like (S. pombe) hs
HG-U133_PLUS_2:209057_X_AT CDC5 cell division cycle 5-like (S. pombe) hs
HG-U133A_2:209057_X_AT CDC5 cell division cycle 5-like (S. pombe) hs
HG-U133A:209057_X_AT CDC5 cell division cycle 5-like (S. pombe) hs
HU35KSUBA:RC_AA130606_AT CDC5 cell division cycle 5-like (S. pombe) hs
HU35KSUBB:RC_R40873_AT CDC5 cell division cycle 5-like (S. pombe) hs
HUGENEFL:D85423_AT CDC5 cell division cycle 5-like (S. pombe) hs
U133_X3P:G2887434_3P_A_AT CDC5 cell division cycle 5-like (S. pombe) hs
U133_X3P:HS.155174.0.S2_3P_A_AT CDC5 cell division cycle 5-like (S. pombe) hs
U133_X3P:HS.155174.0.S1_3P_A_AT CDC5 cell division cycle 5-like (S. pombe) hs
HG-U133A_2:209056_S_AT CDC5 cell division cycle 5-like (S. pombe) hs
HG-FOCUS:209056_S_AT CDC5 cell division cycle 5-like (S. pombe) hs
HG-U133_PLUS_2:209056_S_AT CDC5 cell division cycle 5-like (S. pombe) hs
HG-U133A:209056_S_AT CDC5 cell division cycle 5-like (S. pombe) hs
HG-U95AV2:32040_I_AT CDC5 cell division cycle 5-like (S. pombe) hs
HG-U95AV2:32041_R_AT CDC5 cell division cycle 5-like (S. pombe) hs
MG-U74AV2:95610_AT cell division cycle 5-like (S. pombe) mm
MU11KSUBA:C76314_RC_AT cell division cycle 5-like (S. pombe) mm
MU11KSUBA:C76314_RC_G_AT cell division cycle 5-like (S. pombe) mm
MU11KSUBA:AA408003_RC_S_AT cell division cycle 5-like (S. pombe) mm
MG-U74AV2:97846_AT cell division cycle 5-like (S. pombe) mm
MG-U74BV2:114726_AT cell division cycle 5-like (S. pombe) mm
MOE430A:1428092_AT cell division cycle 5-like (S. pombe) mm
MOUSE430A_2:1428092_AT cell division cycle 5-like (S. pombe) mm
MOUSE430_2:1428092_AT cell division cycle 5-like (S. pombe) mm
MOE430A:1460429_AT cell division cycle 5-like (S. pombe) mm
MOUSE430A_2:1460429_AT cell division cycle 5-like (S. pombe) mm
MOUSE430_2:1460429_AT cell division cycle 5-like (S. pombe) mm
MU19KSUBB:TC34495_AT Cell division cycle 5-like (S. pombe) (Cdc5l), mRNA mm
RG-U34A:AF000578_AT cell division cycle 5-like (S. pombe) rn
RAE230A:1398793_AT cell division cycle 5-like (S. pombe) rn
RAT230_2:1398793_AT cell division cycle 5-like (S. pombe) rn
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3677 DNA binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB00038 Hypothetical protein D1081.8 [Caenorhabditis elegans] emb|CAB00029.1| Hypothetical protein D1081.8 [Caenorhabditis elegans] ref|NP_492303.1| D1081.8 [Caenorhabditis elegans] 0.0
blast CAE67118 Hypothetical protein CBG12532 [Caenorhabditis briggsae] 0.0
blast NP_001008202 cdc5l-prov protein [Xenopus tropicalis] gb|AAH80871.1| Cdc5l-prov protein [Xenopus tropicalis] 1.0E-164
blast CAB00038 Hypothetical protein D1081.8 [Caenorhabditis elegans] emb|CAB00029.1| Hypothetical protein D1081.8 [Caenorhabditis elegans] ref|NP_492303.1| D1081.8 [Caenorhabditis elegans] 1.0E-113
Protein Domains
Database ID Description E-Value
scop a.4.1.Myb All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Myb 2.99999992421363E-5
scop a.4.1.Myb All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Myb 0.00700000021606684
Pfam IPR001005 EMBL-EBI Myb DNA-binding domain 6.4E-11
Pfam IPR001005 EMBL-EBI Myb DNA-binding domain 1.0E-8
Sequence
Target Sequence 
>C. ELEGANS:190714_AT
gcaaacttcttgcttgggacgtagacaacaagccaccatcagtaatctactcccgtgaag
agcttgatgcggctgctgatttaatcaaacaagaagctgaatcaggaccagaattgaaca
gtctaatgtggaaagttgtcgaacaatgtacttcggaaattattctgagtaaagataagt
tcacacgtattgctatcctaccacgagaagaacagatgaaagctttgaatgatgaattcc
aaatgtacagaggatggatgaatcaacgggcgaaacgagctgcaaaagttgagaaaaagc
tgagagtcaagttgggcggttatcaggctattcatgacaagctgtgtaaaaagtatcagg
aagtcaccaccgagattgagatggctaatattgaaaagaaaacttttgaacgtctcggag
agcatgagttgaaggcaatcaacaaacgcgtcgggcgtcttcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCAAACTTCTTGCTTGGGACGTAGA 19 319 1679 Antisense
GTAGACAACAAGCCACCATCAGTAA 636 455 1699 Antisense
CACCATCAGTAATCTACTCCCGTGA 308 199 1712 Antisense
GAAGAGCTTGATGCGGCTGCTGATT 233 339 1735 Antisense
TAAGTTCACACGTATTGCTATCCTA 324 637 1854 Antisense
ATTGCTATCCTACCACGAGAAGAAC 231 7 1867 Antisense
GAATCAACGGGCGAAACGAGCTGCA 705 323 1938 Antisense
GTTGGGCGGTTATCAGGCTATTCAT 505 435 1989 Antisense
GTATCAGGAAGTCACCACCGAGATT 109 455 2031 Antisense
AACTTTTGAACGTCTCGGAGAGCAT 233 139 2079 Antisense
CAACAAACGCGTCGGGCGTCTTCAA 251 189 2118 Antisense
Sequence Source Affymetrix Proprietary Database