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[190710_at] 7TM chemoreceptor, srh family

Description ZK6.9 /REP_DB=WormBase Gene ID /WP=CE18446 /GEN=srh-62 /TR=O61871 /GB=AAG45575.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster 6grp_total > 23      4grp_total > 27      6grp_cgc > 61      6grp_cgc_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 52
1 2 3 4 range
A 13.3
(-3)
A 		44.2
(1.4)
A 		28.2
(-0.9)
A 		55.3
(3)
A 		42
B 8
(-3)
A 		21.3
(0.9)
A 		14.6
(-1.1)
A 		28.5
(3)
A 		21
C 42.9
(3)
A 		20
(-0.5)
A 		3.6
(-3)
A 		28
(0.7)
A 		39
avr 21.4
(-1.4) 		28.5
(0.6) 		15.5
(-3) 		37.3
(3) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 31
1 2 3 4 5 6 range
A 4.5
(-2.9)
A 		3.9
(-3)
A 		30
(3)
A 		23
(1.4)
A 		5.7
(-2.6)
A 		4.8
(-2.8)
A 		26
B 31.7
(3)
A 		7.8
(-2)
A 		2.8
(-3)
A 		8.3
(-1.9)
A 		15.2
(-0.4)
A 		15.2
(-0.4)
A 		29
C 6
(-2.4)
A 		33.3
(3)
A 		6.9
(-2.2)
A 		2.8
(-3)
A 		6.8
(-2.2)
A 		3.9
(-2.8)
A 		31
avr 14.1
(2.2) 		15
(3) 		13.2
(1.5) 		11.4
(-0.1) 		9.2
(-2) 		8
(-3) 		7
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 4.9
(-3)
A 		9.6
(3)
A 		7.4
(0.2)
A 		8.1
(1.1)
A 		5
B 2.6
(-3)
A 		5.3
(1.6)
A 		3.4
(-1.6)
A 		6.1
(3)
A 		4
C 14.2
(3)
A 		5.8
(-0.9)
A 		1.3
(-3)
A 		4.7
(-1.4)
A 		13
avr 7.2
(3) 		6.9
(2.4) 		4
(-3) 		6.3
(1.3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 0.8
(-3)
A 		1.4
(-2.4)
A 		6.5
(3)
A 		5.8
(2.3)
A 		1.7
(-2.1)
A 		1.2
(-2.6)
A 		6
B 11
(3)
A 		2.6
(-1.9)
A 		0.7
(-3)
A 		2.2
(-2.1)
A 		6.2
(0.2)
A 		5.7
(-0.1)
A 		10
C 2.2
(-2)
A 		10.2
(3)
A 		1.8
(-2.3)
A 		0.6
(-3)
A 		2.2
(-2)
A 		1.3
(-2.6)
A 		10
avr 4.7
(3) 		4.7
(3) 		3
(-2.1) 		2.9
(-2.4) 		3.4
(-0.9) 		2.7
(-3) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190710_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14888
Sequence Type Exemplar sequence
Representative Public ID ZK6.9 NCBI
Target Description ZK6.9 /REP_DB=WormBase Gene ID /WP=CE18446 /GEN=srh-62 /TR=O61871 /GB=AAG45575.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070789(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070789 NCBI Caenorhabditis elegans Serpentine Receptor, class H family member (srh-62) (srh-62) mRNA, complete cds. 11/11 None
ZK6.9 ENSEMBL cdna:known chromosome:CEL140:V:401517:402957:-1 gene:ZK6.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:401516-402957(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srh family
Gene Symbol srh-62
Ensembl ZK6.9
Entrez Gene 191867 Entrez gene
SwissProt O61871 EMBL-EBI
WormBase CE18446 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4930 G-protein coupled receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAG45575 Serpentine receptor, class h protein 62 [Caenorhabditis elegans] ref|NP_503190.1| Serpentine Receptor, class H family member (srh-62) [Caenorhabditis elegans] 0.0
blast T25362 hypothetical protein T27E7.2 - Caenorhabditis elegans 1.0E-122
blast CAE11307 Hypothetical protein T27E7.8 [Caenorhabditis elegans] ref|NP_001023404.1| Serpentine Receptor, class H family member (srh-63) [Caenorhabditis elegans] 1.0E-122
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503190.1 7 34-56,69-91,111-133,154-173,221-243,260-282,297-316
ZK6.9 7 34-56,69-91,111-133,154-173,221-243,260-282,297-316
Sequence
Target Sequence 
>C. ELEGANS:190710_AT
tggaacagttcttcttgtgactccgccatttttcaatcttccggatcaaaatgcgtctaa
acttgagatactgaaaatattcccctgtccactgaaagagtttttcatggagccaactgt
cgtaatagcttttggaaatcattgggagtcatatttaattcaatcgagcaaagcgttatt
cttcatttcaatgcttcaaattttatatttctctgcctgctgtatttattatcttgtcat
ttacaaacgttccaatatttctgctacaactcgtcgtctgcagctccgtgtattcattgg
cgttgtaattcaaagtttgataccaattattttaactaatattcctgtgataacttttct
aaataagaatacgcgggaacagtatgaccaaatcagtaacaacttgctgtttataagttc
aattgttcaaaatggagttgcgagtctttctattctcatggtgcata

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGGAACAGTTCTTCTTGTGACTCCG 527 547 498 Antisense
AATCTTCCGGATCAAAATGCGTCTA 189 171 532 Antisense
TACTGAAAATATTCCCCTGTCCACT 227 647 566 Antisense
GAGCCAACTGTCGTAATAGCTTTTG 302 385 607 Antisense
AGCGTTATTCTTCATTTCAATGCTT 320 77 669 Antisense
TCTGCCTGCTGTATTTATTATCTTG 561 609 709 Antisense
CAAACGTTCCAATATTTCTGCTACA 339 187 741 Antisense
TCTGCTACAACTCGTCGTCTGCAGC 695 607 757 Antisense
TGCAGCTCCGTGTATTCATTGGCGT 690 577 776 Antisense
ATGGAGTTGCGAGTCTTTCTATTCT 697 51 929 Antisense
AGTCTTTCTATTCTCATGGTGCATA 573 61 940 Antisense
Sequence Source Affymetrix Proprietary Database