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[190705_s_at]

Description C17C3.12 /REP_DB=WormBase Gene ID /WP=CE03983 /CHR=2 /FEA=Sanger Annotation /DEF=acyl-CoA dehydrogenase (ST.LOUIS) TR:Q18057 protein_id:AAB52696.1
Cluster 6grp_total > 66      4grp_total > 09      6grp_cgc > 47      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 62
1 2 3 4 range
A 35
(-2.5)
A 		30.4
(-3)
A 		54.2
(-0.5)
A 		88.5
(3)
P 		58
B 26.8
(-3)
A 		44.2
(2.5)
A 		35.5
(-0.3)
A 		45.9
(3)
P 		19
C 27.7
(-3)
A 		32.1
(-2.3)
A 		27.4
(-3)
P 		69
(3)
P 		42
avr 29.8
(-3) 		35.6
(-2.1) 		39
(-1.5) 		67.8
(3) 		38

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 319
1 2 3 4 5 6 range
A 48.7
(-3)
A 		86.6
(1)
P 		76.8
(-0)
P 		49.5
(-2.9)
A 		54.4
(-2.4)
P 		105.8
(3)
P 		57
B 27.3
(-3)
A 		84.8
(-1.6)
P 		104.7
(-1.1)
P 		40.6
(-2.7)
A 		40.1
(-2.7)
P 		266.9
(3)
P 		240
C 30.2
(-2.8)
A 		105.5
(-1.4)
P 		80
(-1.9)
P 		36.5
(-2.7)
A 		20.3
(-3)
A 		338.9
(3)
P 		319
avr 35.4
(-3) 		92.3
(-1.3) 		87.2
(-1.5) 		42.2
(-2.8) 		38.3
(-2.9) 		237.2
(3) 		202
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 12.7
(1.8)
A 		6.6
(-3)
A 		14.2
(3)
A 		13
(2.1)
P 		8
B 8.6
(-2.1)
A 		10.9
(3)
A 		8.2
(-3)
A 		9.8
(0.6)
P 		3
C 9.2
(-3)
A 		9.2
(-3)
A 		9.5
(-2.3)
P 		11.6
(3)
P 		2
avr 10.2
(-0) 		8.9
(-3) 		10.6
(0.9) 		11.5
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 107
1 2 3 4 5 6 range
A 9
(-3)
A 		30.8
(3)
P 		16.7
(-0.9)
P 		12.5
(-2)
A 		16.4
(-1)
P 		25.7
(1.6)
P 		22
B 9.5
(-3)
A 		28.2
(-1.8)
P 		25.4
(-1.9)
P 		10.7
(-2.9)
A 		16.3
(-2.5)
P 		99.5
(3)
P 		90
C 11.2
(-2.7)
A 		32.2
(-1.6)
P 		20.4
(-2.2)
P 		7.3
(-3)
A 		6.6
(-3)
A 		113.4
(3)
P 		107
avr 9.9
(-3) 		30.4
(-1.2) 		20.8
(-2.1) 		10.2
(-3) 		13.1
(-2.7) 		79.5
(3) 		70
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 190705_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5154
Sequence Type Exemplar sequence
Representative Public ID C17C3.12 NCBI
Target Description C17C3.12 /REP_DB=WormBase Gene ID /WP=CE03983 /CHR=2 /FEA=Sanger Annotation /DEF=acyl-CoA dehydrogenase (ST.LOUIS) TR:Q18057 protein_id:AAB52696.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062665(10), NM_062666(9), NM_062667(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062665 NCBI Caenorhabditis elegans C17C3.12a (C17C3.12) mRNA, complete cds. 10/11 None
NM_062666 NCBI Caenorhabditis elegans C17C3.12b (C17C3.12) mRNA, complete cds. 9/11 None
NM_062667 NCBI Caenorhabditis elegans C17C3.12c (C17C3.12) mRNA, complete cds. 11/11 None
GENEFINDER00000005307 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:5545002:5547459:-1 11/11 None
C17C3.12a ENSEMBL cdna:known chromosome:CEL140:II:5544742:5547460:-1 gene:C17C3.12 10/11 A 
C17C3.12b ENSEMBL cdna:known chromosome:CEL140:II:5544764:5547460:-1 gene:C17C3.12 9/11 A 
C17C3.12c.2 ENSEMBL cdna:known chromosome:CEL140:II:5545002:5547460:-1 gene:C17C3.12 11/11 None
C17C3.12c.1 ENSEMBL cdna:known chromosome:CEL140:II:5545002:5547460:-1 gene:C17C3.12 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_001026791 3/11 Cross Hyb Matching Probes None
SNAP00000005289 2/11 Cross Hyb Matching Probes None
SNAP00000005290 6/11 Cross Hyb Matching Probes None
C17C3.18 3/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:5544999-5547457(-) 100.0 100.0
Public Domain and Genome References
Ensembl C17C3.12
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAL02436 Hypothetical protein C17C3.12b [Caenorhabditis elegans] ref|NP_495067.1| C17C3.12b [Caenorhabditis elegans] 1.0E-164
blast AAK31426 Hypothetical protein C17C3.12a [Caenorhabditis elegans] ref|NP_495066.2| C17C3.12a [Caenorhabditis elegans] 1.0E-152
blast AAK31426 Hypothetical protein C17C3.12a [Caenorhabditis elegans] ref|NP_495066.2| C17C3.12a [Caenorhabditis elegans] 1.0E-135
blast CAE59136 Hypothetical protein CBG02437 [Caenorhabditis briggsae] 1.0E-130
blast AAL02437 Hypothetical protein C17C3.12c [Caenorhabditis elegans] ref|NP_495068.1| C17C3.12c [Caenorhabditis elegans] 1.0E-125
blast AAL02437 Hypothetical protein C17C3.12c [Caenorhabditis elegans] ref|NP_495068.1| C17C3.12c [Caenorhabditis elegans] 1.0E-124
Protein Families
Method ID Description E-Value
ec ACDM_HUMAN (P11310) Acyl-CoA dehydrogenase, medium-chain specific, mitochondrial precursor (EC 1.3.99.3) (MCAD) 3.0E-92
ec ACDM_HUMAN (P11310) Acyl-CoA dehydrogenase, medium-chain specific, mitochondrial precursor (EC 1.3.99.3) (MCAD) 1.0E-148
ec ACDL_HUMAN (P28330) Acyl-CoA dehydrogenase, long-chain specific, mitochondrial precursor (EC 1.3.99.13) (LCAD) 9.0E-99
ec ACDL_HUMAN (P28330) Acyl-CoA dehydrogenase, long-chain specific, mitochondrial precursor (EC 1.3.99.13) (LCAD) 1.0E-117
Protein Domains
Database ID Description E-Value
Pfam IPR006090 EMBL-EBI Acyl-CoA dehydrogenase, C-terminal 1.9E-4
Pfam IPR006090 EMBL-EBI Acyl-CoA dehydrogenase, C-terminal 8.6E-37
Pfam IPR006091 EMBL-EBI Acyl-CoA dehydrogenase, central domain 6.4E-30
Pfam IPR006092 EMBL-EBI Acyl-CoA dehydrogenase, N-terminal 1.8E-26
Pfam IPR006090 EMBL-EBI Acyl-CoA dehydrogenase, C-terminal 3.7E-19
Pfam IPR006090 EMBL-EBI Acyl-CoA dehydrogenase, C-terminal 1.9E-4
Pfam IPR006090 EMBL-EBI Acyl-CoA dehydrogenase, C-terminal 8.6E-37
Pfam IPR006092 EMBL-EBI Acyl-CoA dehydrogenase, N-terminal 8.5E-7
Pfam IPR006090 EMBL-EBI Acyl-CoA dehydrogenase, C-terminal 1.9E-4
Pfam IPR006090 EMBL-EBI Acyl-CoA dehydrogenase, C-terminal 8.6E-37
Pfam IPR006091 EMBL-EBI Acyl-CoA dehydrogenase, central domain 5.4E-22
Sequence
Target Sequence 
>C. ELEGANS:190705_S_AT
tgcaccgattgctgattttttccttgttcttgcaaatgcggatcctgagaaaggatacag
aggtgtcacttgtttcattgtggatcgagatcatgaaggagtcgttcttggggaacaaga
tgataatcttggaatgcgtgcaggaaccattgctcaagtgcatttgaatagtgtgagagt
tccaaaaacatcaatcgttggggaatatggaaaaggatacaaatacgctattgaagttct
gaatgccagtcgaattgtaattggagcacaaatgggtcttcaacaccaaattgcaaaaat
tcaaacggaaattgaagctgctcgtctaatggtttataattgtgcacgaatgaaagattg
tggaatgccatttgtcaaagaagcttcaatggcaaagtattacgctccagaagtggcttg
caaaacaacaaaacaatgtattgagtggctgggcggtgtcggattcactaaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGCACCGATTGCTGATTTTTTCCTT 521 575 579 Antisense
TTTTTCCTTGTTCTTGCAAATGCGG 245 673 595 Antisense
GAGGTGTCACTTGTTTCATTGTGGA 685 401 638 Antisense
GATCATGAAGGAGTCGTTCTTGGGG 495 419 667 Antisense
GGAATGCGTGCAGGAACCATTGCTC 384 533 709 Antisense
GGAACCATTGCTCAAGTGCATTTGA 414 529 721 Antisense
GAAGTTCTGAATGCCAGTCGAATTG 232 337 811 Antisense
TGGAGCACAAATGGGTCTTCAACAC 214 549 840 Antisense
GAAGCTGCTCGTCTAATGGTTTATA 325 343 892 Antisense
CAATGTATTGAGTGGCTGGGCGGTG 103 183 1012 Antisense
CTGGGCGGTGTCGGATTCACTAAGA 149 241 1027 Antisense
Sequence Source Affymetrix Proprietary Database