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[190703_at] calmodulin-like protein

Description E02A10.3 /REP_DB=WormBase Gene ID /WP=CE27751 /TR=P90802 /GB=CAB02878.2 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=calmodulin-like protein
Cluster 6grp_high1_10_10 > 20      4grp_high_8_8 > 04      6grp_total > 22      4grp_total > 12      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 307
1 2 3 4 range
A 131.5
(-1.2)
P 		73.8
(-2.3)
M 		38.2
(-3)
A 		344.7
(3)
P 		307
B 133
(-1)
P 		64
(-3)
P 		75.8
(-2.7)
P 		267
(3)
P 		203
C 134.3
(-0.5)
P 		106.6
(-1.5)
P 		63.7
(-3)
P 		234.6
(3)
P 		171
avr 132.9
(-1) 		81.5
(-2.4) 		59.2
(-3) 		282.1
(3) 		223

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 68
1 2 3 4 5 6 range
A 116.9
(1.3)
P 		124.9
(2.1)
P 		134.7
(3)
P 		98.3
(-0.4)
P 		78.6
(-2.3)
P 		70.8
(-3)
P 		64
B 104.6
(0.7)
P 		106.7
(0.9)
P 		99.5
(0.2)
P 		128.4
(3)
P 		66.5
(-3)
P 		83.5
(-1.4)
P 		62
C 101.1
(2.8)
P 		97.8
(2.2)
P 		68.9
(-3)
M 		102.5
(3)
P 		95.3
(1.7)
P 		91.8
(1.1)
P 		34
avr 107.5
(2.5) 		109.8
(3) 		101
(1.2) 		109.7
(3) 		80.1
(-3) 		82
(-2.6) 		30
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 47
1 2 3 4 range
A 47.9
(2.6)
P 		16
(-2.1)
M 		10
(-3)
A 		50.5
(3)
P 		41
B 42.4
(0.9)
P 		15.8
(-3)
P 		17.6
(-2.7)
P 		56.9
(3)
P 		41
C 44.5
(3)
P 		30.6
(-0.7)
P 		22.2
(-3)
P 		39.6
(1.7)
P 		22
avr 44.9
(2.2) 		20.8
(-2.2) 		16.6
(-3) 		49
(3) 		32

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 27
1 2 3 4 5 6 range
A 21.5
(-2.1)
P 		44.4
(3)
P 		29.3
(-0.3)
P 		24.9
(-1.3)
P 		23.7
(-1.6)
P 		17.2
(-3)
P 		27
B 36.4
(3)
P 		35.5
(2.6)
P 		24.2
(-3)
P 		34
(1.8)
P 		27
(-1.6)
P 		31.1
(0.4)
P 		12
C 37.5
(3)
P 		29.9
(0.7)
P 		17.5
(-3)
M 		20.6
(-2.1)
P 		30.8
(1)
P 		30.7
(1)
P 		20
avr 31.8
(0.8) 		36.6
(3) 		23.7
(-3) 		26.5
(-1.7) 		27.2
(-1.4) 		26.3
(-1.8) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190703_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14460
Sequence Type Exemplar sequence
Representative Public ID E02A10.3 NCBI
Target Description E02A10.3 /REP_DB=WormBase Gene ID /WP=CE27751 /TR=P90802 /GB=CAB02878.2 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=calmodulin-like protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073746
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000035821 ENSEMBL cdna:SNAP chromosome:CEL140:V:12589773:12590533:1 None
NM_073746 NCBI Caenorhabditis elegans E02A10.3 (E02A10.3) mRNA, complete cds. A 
GENEFINDER00000035823 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:12588441:12590533:1 None
E02A10.3 ENSEMBL cdna:known chromosome:CEL140:V:12587705:12590533:1 gene:E02A10.3 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:12589441-12590533(+) 100.0 100.0
Public Domain and Genome References
Gene Title calmodulin-like protein
Ensembl E02A10.3
Entrez Gene 179722 Entrez gene
SwissProt P90802 EMBL-EBI
WormBase CE27751 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
1539 ciliary or flagellar motility inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
9288 flagellum (sensu Bacteria) inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5509 calcium ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB02878 Hypothetical protein E02A10.3 [Caenorhabditis elegans] ref|NP_506147.1| E02A10.3 [Caenorhabditis elegans] 1.0E-114
blast CAE75516 Hypothetical protein CBG23534 [Caenorhabditis briggsae] 1.0E-111
blast CAB02878 Hypothetical protein E02A10.3 [Caenorhabditis elegans] ref|NP_506147.1| E02A10.3 [Caenorhabditis elegans] 1.0E-102
blast CAE75516 Hypothetical protein CBG23534 [Caenorhabditis briggsae] 1.0E-102
blast AAS99337 putative calmodulin isoform a [Dictyocaulus viviparus] 6.0E-80
blast AAS99337 putative calmodulin isoform a [Dictyocaulus viviparus] 9.0E-80
blast CAB02878 Hypothetical protein E02A10.3 [Caenorhabditis elegans] ref|NP_506147.1| E02A10.3 [Caenorhabditis elegans] 2.0E-72
Protein Domains
Database ID Description E-Value
Pfam IPR002048 EMBL-EBI Calcium-binding EF-hand 2.3E-6
Pfam IPR002048 EMBL-EBI Calcium-binding EF-hand 2.2E-7
Pfam IPR002048 EMBL-EBI Calcium-binding EF-hand 8.2E-4
Pfam IPR002048 EMBL-EBI Calcium-binding EF-hand 1.0E-8
Pfam IPR002048 EMBL-EBI Calcium-binding EF-hand 2.2E-7
Pfam IPR002048 EMBL-EBI Calcium-binding EF-hand 8.2E-4
Pfam IPR002048 EMBL-EBI Calcium-binding EF-hand 1.0E-8
Pfam IPR002048 EMBL-EBI Calcium-binding EF-hand 2.3E-6
Pfam IPR002048 EMBL-EBI Calcium-binding EF-hand 2.2E-7
Pfam IPR002048 EMBL-EBI Calcium-binding EF-hand 8.2E-4
Pfam IPR002048 EMBL-EBI Calcium-binding EF-hand 1.0E-8
Sequence
Target Sequence 
>C. ELEGANS:190703_AT
gacaaattcagttttctactcggaccccttactatctcaacatttgctcgaaggatactc
tgaagaagaactccaggagtatcgtcaagtcttcaacatgtttgatgcagatcgcagcgg
agccattgcaatagacgaacttgaagcagcaattaagaatttaggattggagcagacaag
agacgaattggataagattattgacgaggtcgatcaaagaggtaatcatcagatagattt
tgacgagttctgtgtggttatgagaaggctcacaatgaagaagagtaactggaatgaagt
tgtcaaagagtgcttcaccgtttttgacagagtgagttcaaatgcttgcagattttgtga
ctctaattcgttcgtatttcagtctgaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACAAATTCAGTTTTCTACTCGGAC 444 363 15 Antisense
CCCCTTACTATCTCAACATTTGCTC 254 261 39 Antisense
AACATTTGCTCGAAGGATACTCTGA 640 137 53 Antisense
GGATACTCTGAAGAAGAACTCCAGG 442 509 67 Antisense
GAACTCCAGGAGTATCGTCAAGTCT 197 349 82 Antisense
GTATCGTCAAGTCTTCAACATGTTT 108 455 93 Antisense
GATGCAGATCGCAGCGGAGCCATTG 596 411 118 Antisense
GCGGAGCCATTGCAATAGACGAACT 217 293 131 Antisense
GACAGAGTGAGTTCAAATGCTTGCA 416 369 340 Antisense
GATTTTGTGACTCTAATTCGTTCGT 133 427 365 Antisense
AATTCGTTCGTATTTCAGTCTGAAA 637 177 379 Antisense
Sequence Source Affymetrix Proprietary Database