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[190702_at] ADP/ATP carrier protein

Description K01H12.2 /REP_DB=WormBase Gene ID /WP=CE03454 /TR=Q21103 /GB=CAA92472.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=ADP-ATP carrier protein
Cluster 6grp_high1_10_10 > 98      6grp_total > 98      4grp_total > 02      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 143
1 2 3 4 range
A 63.6
(-2.9)
A 		60.9
(-3)
A 		82.9
(-2)
P 		195.5
(3)
P 		135
B 57
(-3)
A 		89.6
(-1.2)
A 		66.6
(-2.5)
A 		163
(3)
P 		106
C 86.5
(-1.3)
M 		52.4
(-3)
A 		65.4
(-2.3)
A 		172.2
(3)
P 		120
avr 69
(-2.9) 		67.6
(-3) 		71.6
(-2.8) 		176.9
(3) 		109

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 513
1 2 3 4 5 6 range
A 76.3
(-2.6)
A 		41.1
(-3)
A 		90.2
(-2.4)
P 		125.6
(-2)
P 		364.6
(0.9)
P 		533.1
(3)
P 		492
B 86.9
(-2.5)
P 		51.6
(-3)
A 		78.1
(-2.6)
P 		126.2
(-1.9)
P 		409.1
(2.2)
P 		464.7
(3)
P 		413
C 49.1
(-2.7)
A 		36.3
(-2.9)
P 		27.3
(-3)
A 		97.6
(-2.2)
P 		414.8
(1.5)
P 		540.7
(3)
P 		513
avr 70.8
(-2.6) 		43
(-3) 		65.2
(-2.7) 		116.5
(-2.1) 		396.2
(1.5) 		512.8
(3) 		470
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 22
1 2 3 4 range
A 23.2
(0.9)
A 		13.2
(-3)
A 		21.7
(0.3)
P 		28.6
(3)
P 		15
B 18.2
(-2.1)
A 		22.1
(-0.9)
A 		15.4
(-3)
A 		34.7
(3)
P 		19
C 28.6
(2.8)
M 		15.1
(-3)
A 		22.8
(0.3)
A 		29
(3)
P 		14
avr 23.3
(-0.2) 		16.8
(-3) 		20
(-1.6) 		30.8
(3) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 174
1 2 3 4 5 6 range
A 14.1
(-3)
A 		14.6
(-3)
A 		19.7
(-2.7)
P 		31.9
(-2.1)
P 		110
(2)
P 		129.8
(3)
P 		116
B 30.2
(-2.5)
P 		17.2
(-3)
A 		19
(-2.9)
P 		33.4
(-2.4)
P 		166.2
(2.7)
P 		173.3
(3)
P 		156
C 18.2
(-2.6)
A 		11.1
(-2.9)
P 		7
(-3)
A 		19.6
(-2.6)
P 		134.2
(1.4)
P 		181
(3)
P 		174
avr 20.8
(-2.7) 		14.3
(-3) 		15.2
(-3) 		28.3
(-2.4) 		136.8
(2) 		161.4
(3) 		147
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190702_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9008
Sequence Type Exemplar sequence
Representative Public ID K01H12.2 NCBI
Target Description K01H12.2 /REP_DB=WormBase Gene ID /WP=CE03454 /TR=Q21103 /GB=CAA92472.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=ADP-ATP carrier protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069326(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069326 NCBI Caenorhabditis elegans K01H12.2 (K01H12.2) mRNA, complete cds. 11/11 None
SNAP00000037360 ENSEMBL cdna:SNAP chromosome:CEL140:IV:9708194:9709235:-1 11/11 None
GENEFINDER00000037364 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:9708194:9710022:-1 11/11 None
K01H12.2 ENSEMBL cdna:known chromosome:CEL140:IV:9708194:9709235:-1 gene:K01H12.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:9708199-9709241(-) 100.0 100.0
chrIV:8459214-8460189(-) 92.57 92.57
Public Domain and Genome References
Gene Title ADP/ATP carrier protein
Ensembl K01H12.2
Entrez Gene 186855 Entrez gene
SwissProt Q21103 EMBL-EBI
WormBase CE03454 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1604119_AT similar to ADP/ATP translocase 3 (Adenine nucleotide translocator 2) (ANT 3) (ADP,ATP carrier protein 3) (Solute carrier family 25, member 6) (ADP,ATP carrier protein, isoform T2) cfa
CANINE:1601975_S_AT similar to ADP/ATP translocase 3 (Adenine nucleotide translocator 2) (ANT 3) (ADP,ATP carrier protein 3) (Solute carrier family 25, member 6) (ADP,ATP carrier protein, isoform T2) cfa
CANINE:1592155_X_AT similar to ADP/ATP translocase 3 (Adenine nucleotide translocator 2) (ANT 3) (ADP,ATP carrier protein 3) (Solute carrier family 25, member 6) (ADP,ATP carrier protein, isoform T2) cfa
CANINE_2:CFA.424.1.S1_AT similar to ADP/ATP translocase 3 (Adenine nucleotide translocator 2) (ANT 3) (ADP,ATP carrier protein 3) (Solute carrier family 25, member 6) (ADP,ATP carrier protein, isoform T2) cfa
CANINE_2:CFAAFFX.17230.1.S1_AT similar to ADP/ATP translocase 3 (Adenine nucleotide translocator 2) (ANT 3) (ADP,ATP carrier protein 3) (Solute carrier family 25, member 6) (ADP,ATP carrier protein, isoform T2) cfa
CANINE_2:CFAAFFX.17230.1.S1_S_AT similar to ADP/ATP translocase 3 (Adenine nucleotide translocator 2) (ANT 3) (ADP,ATP carrier protein 3) (Solute carrier family 25, member 6) (ADP,ATP carrier protein, isoform T2) cfa
DROSOPHILA_2:1625005_S_AT Adenine nucleotide translocase 2 dm
DROSGENOME1:142495_AT Adenine nucleotide translocase 2 dm
CHICKEN:GGA.4827.1.S2_AT solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6 gga
CHICKEN:GGAAFFX.11870.1.S1_S_AT solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6 gga
HG-U133_PLUS_2:212085_AT solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6 hs
HG-U133A:212085_AT solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6 hs
HG-U133A_2:212085_AT solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6 hs
HG-U95AV2:40436_G_AT solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6 hs
HG-U95AV2:40435_AT solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6 hs
HUGENEFL:J03592_AT solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6 hs
U133_X3P:HS.164280.1.A1_3P_AT solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6 hs
U133_X3P:HS.164280.0.A1_3P_A_AT solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6 hs
HG-U133A_2:212826_S_AT solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6 hs
HG-U133_PLUS_2:212826_S_AT solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6 hs
HG-U133A:212826_S_AT solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6 hs
HG-U95E:88085_AT solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6 hs
MOUSE430A_2:1430542_A_AT similar to adenine nucleotide translocase mm
MOE430A:1430542_A_AT similar to adenine nucleotide translocase mm
MOUSE430_2:1430542_A_AT similar to adenine nucleotide translocase mm
MU11KSUBB:MSA.13983.0_F_AT similar to adenine nucleotide translocase mm
MU11KSUBB:MSA.30232.0_F_AT similar to adenine nucleotide translocase mm
MOE430A:1438546_X_AT similar to adenine nucleotide translocase mm
MOUSE430A_2:1438546_X_AT similar to adenine nucleotide translocase mm
MOUSE430_2:1438546_X_AT similar to adenine nucleotide translocase mm
MOE430A:1438545_AT similar to adenine nucleotide translocase mm
MOUSE430A_2:1438545_AT similar to adenine nucleotide translocase mm
MOUSE430_2:1438545_AT similar to adenine nucleotide translocase mm
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6810 transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5743 mitochondrial inner membrane inferred from electronic annotation QuickGO AmiGO
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5215 transporter activity inferred from electronic annotation QuickGO AmiGO
5488 binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA92472 Hypothetical protein K01H12.2 [Caenorhabditis elegans] ref|NP_501727.1| K01H12.2 [Caenorhabditis elegans] 1.0E-161
blast AAB38001 Hypothetical protein T01B11.4 [Caenorhabditis elegans] ref|NP_501440.1| Temporarily Assigned Gene name family member (tag-316) [Caenorhabditis elegans] 1.0E-160
blast CAE60169 Hypothetical protein CBG03723 [Caenorhabditis briggsae] 1.0E-158
Protein Domains
Database ID Description E-Value
Pfam IPR001993 EMBL-EBI Mitochondrial substrate carrier 2.6E-37
Pfam IPR001993 EMBL-EBI Mitochondrial substrate carrier 4.1E-30
Pfam IPR001993 EMBL-EBI Mitochondrial substrate carrier 1.5E-19
Pfam IPR001993 EMBL-EBI Mitochondrial substrate carrier 2.6E-37
Pfam IPR001993 EMBL-EBI Mitochondrial substrate carrier 4.1E-30
Pfam IPR001993 EMBL-EBI Mitochondrial substrate carrier 1.5E-19
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_501727.1 3 129-151,189-211,226-248
K01H12.2 3 129-151,189-211,226-248
SNAP00000037360 3 129-151,189-211,226-248
GENEFINDER00000037364 3 168-190,228-250,265-287
Sequence
Target Sequence 
>C. ELEGANS:190702_AT
aacttcgcattcaaggatacatacaaaaacattttccaaaagggattggacaagaagaag
gatttttggaagttcttcgccgggaatctcgcttctggtggagctgccggagcaacttct
ctctgcttcgtctacccattggatttcgctcgtacccgcttggctgctgacgtcggaaaa
gctaatgaacgtgaattcaaaggtctggctgattgtctcgtcaagattgcaaaatcggat
ggtccaatcggactctacagaggattctttgtttctgtacaaggtatcatcatctaccgt
gccgcttacttcggaatgttcgacactgccaagatggtattcactgctgatggcaagaaa
ctcaacttcttcgccgcctgggctattgctcaagtcgtcaccgtcggatctggaatcatt
tcctatccatgggatactgttcgccgtcgcatgatgatgcagtctggtcgcaaagatgtt
ctctacaagaataccttggattgtgctgtcaagatcatcaaaaacgaaggaatgtctgcc
atgttcaagggagctctgtcgaatgtgttccgtggaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACTTCGCATTCAAGGATACATACA 414 139 325 Antisense
CCGCTTGGCTGCTGACGTCGGAAAA 268 261 480 Antisense
CAAAGGTCTGGCTGATTGTCTCGTC 143 193 522 Antisense
TTGTCTCGTCAAGATTGCAAAATCG 625 705 537 Antisense
GCAAAATCGGATGGTCCAATCGGAC 710 317 553 Antisense
GAGGATTCTTTGTTTCTGTACAAGG 71 403 584 Antisense
TCAAGTCGTCACCGTCGGATCTGGA 563 631 714 Antisense
GATCTGGAATCATTTCCTATCCATG 96 419 731 Antisense
AAGAATACCTTGGATTGTGCTGTCA 633 151 811 Antisense
CATGTTCAAGGGAGCTCTGTCGAAT 710 205 864 Antisense
GCTCTGTCGAATGTGTTCCGTGGAA 124 299 877 Antisense
Sequence Source Affymetrix Proprietary Database