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[190700_s_at]

Description R186.4 /REP_DB=WormBase Gene ID /WP=CE27771 /GEN=lin-46 /TR=Q22010 /GB=CAB01440.2 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=gephyrin like
Cluster 6grp_highest_10_10 > 37      6grp_high1_10_10 > 73      4grp_high_8_8 > 0      6grp_highest_nonorm > 72      6grp_total > 60      4grp_total > 07      6grp_highest_sub > 03_04      6grp_high1_sub > 03_04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 176
1 2 3 4 range
A 304.4
(-1.1)
P 		309.1
(-0.9)
P 		272.8
(-3)
M 		374.7
(3)
P 		102
B 389.2
(3)
P 		212.9
(-3)
P 		296.1
(-0.2)
P 		326.3
(0.9)
P 		176
C 307.7
(-1.5)
P 		288.3
(-3)
A 		364.8
(3)
P 		291.2
(-2.8)
P 		77
avr 333.8
(3) 		270.1
(-3) 		311.2
(0.9) 		330.7
(2.7) 		64

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 276
1 2 3 4 5 6 range
A 367.1
(-1.8)
P 		390.4
(-1)
P 		499.3
(3)
P 		490.6
(2.7)
P 		334.6
(-3)
P 		376.6
(-1.5)
P 		165
B 432
(-1.2)
P 		424.9
(-1.5)
P 		520.3
(3)
P 		442.1
(-0.7)
P 		493.7
(1.7)
P 		394.1
(-3)
P 		126
C 376.8
(-1.8)
P 		334.3
(-2.8)
P 		477.9
(0.4)
P 		599.2
(3)
P 		323.4
(-3)
P 		474.5
(0.3)
P 		276
avr 392
(-2.6) 		383.2
(-3) 		499.2
(2.5) 		510.6
(3) 		383.9
(-3) 		415.1
(-1.5) 		127
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 78
1 2 3 4 range
A 110.8
(3)
P 		67.1
(-1.7)
P 		71.3
(-1.2)
M 		54.9
(-3)
P 		56
B 124.1
(3)
P 		52.6
(-3)
P 		68.6
(-1.7)
P 		69.5
(-1.6)
P 		72
C 101.9
(1.1)
P 		82.9
(-0.4)
A 		127.1
(3)
P 		49.1
(-3)
P 		78
avr 112.3
(3) 		67.5
(-1.9) 		89
(0.4) 		57.8
(-3) 		55

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 133
1 2 3 4 5 6 range
A 67.7
(-3)
P 		138.8
(3)
P 		108.7
(0.5)
P 		124.4
(1.8)
P 		101
(-0.2)
P 		91.7
(-1)
P 		71
B 150.3
(-0.6)
P 		141.4
(-1.3)
P 		126.3
(-2.3)
P 		117.1
(-3)
P 		200.6
(3)
P 		147
(-0.9)
P 		84
C 139.7
(1)
P 		102
(-3)
P 		121.6
(-0.9)
P 		120.5
(-1)
P 		104.7
(-2.7)
P 		158.8
(3)
P 		57
avr 119.2
(-2.9) 		127.4
(0.1) 		118.9
(-3) 		120.7
(-2.3) 		135.4
(3) 		132.5
(1.9) 		17
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 190700_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13955
Sequence Type Exemplar sequence
Representative Public ID R186.4 NCBI
Target Description R186.4 /REP_DB=WormBase Gene ID /WP=CE27771 /GEN=lin-46 /TR=Q22010 /GB=CAB01440.2 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=gephyrin like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073846(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073846 NCBI Caenorhabditis elegans R186.7 (R186.7) mRNA, complete cds. 11/11 None
SNAP00000011791 ENSEMBL cdna:SNAP chromosome:CEL140:V:12973707:12975599:1 11/11 None
GENEFINDER00000011795 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:12973707:12975599:1 11/11 None
R186.7.1 ENSEMBL cdna:known chromosome:CEL140:V:12973698:12975987:1 gene:R186.7 11/11 None
R186.7.2 ENSEMBL cdna:known chromosome:CEL140:V:12973707:12975872:1 gene:R186.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:12971321-12975599(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl R186.7
Entrez Gene 179783 Entrez gene
SwissProt Q95ZQ5 EMBL-EBI
WormBase CE27772 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1601110_S_AT pinin, desmosome associated protein cfa
CANINE:1591946_S_AT pinin, desmosome associated protein cfa
CANINE:1582516_AT pinin, desmosome associated protein cfa
CANINE_2:CFA.1279.1.S1_AT pinin, desmosome associated protein cfa
CANINE_2:CFAAFFX.21428.1.S1_S_AT pinin, desmosome associated protein cfa
CANINE:1601111_AT Pinin, desmosome associated protein cfa
DROSOPHILA_2:1641196_AT Pinin dm
DROSGENOME1:149576_AT Pinin dm
CHICKEN:GGA.9697.1.S1_S_AT pinin, desmosome associated protein gga
CHICKEN:GGAAFFX.23151.1.S1_AT pinin, desmosome associated protein gga
HG-U95AV2:41574_AT pinin, desmosome associated protein hs
HG-U133A:212036_S_AT pinin, desmosome associated protein hs
HG-U133_PLUS_2:212036_S_AT pinin, desmosome associated protein hs
HG-U133A_2:212036_S_AT pinin, desmosome associated protein hs
HG-U133A:212037_AT pinin, desmosome associated protein hs
HG-U133_PLUS_2:212037_AT pinin, desmosome associated protein hs
HG-FOCUS:212037_AT pinin, desmosome associated protein hs
HG-U133A_2:212037_AT pinin, desmosome associated protein hs
HG-U95AV2:33543_S_AT pinin, desmosome associated protein hs
HUGENEFL:U77718_AT pinin, desmosome associated protein hs
U133_X3P:HS2.44499.4.S1_3P_S_AT pinin, desmosome associated protein hs
U133_X3P:HS.44499.3.A2_3P_AT pinin, desmosome associated protein hs
U133_X3P:HS.44499.3.A1_3P_S_AT pinin, desmosome associated protein hs
HG-U133_PLUS_2:1567214_A_AT pinin, desmosome associated protein hs
HG-U133_PLUS_2:1567213_AT pinin, desmosome associated protein hs
HU35KSUBD:RC_N63419_AT Pinin, desmosome associated protein hs
MOE430A:1423325_AT pinin mm
MOUSE430A_2:1423325_AT pinin mm
MOUSE430_2:1423325_AT pinin mm
MOE430A:1450938_AT pinin mm
MOUSE430A_2:1450938_AT pinin mm
MOUSE430_2:1450938_AT pinin mm
MOE430A:1423324_AT pinin mm
MOUSE430A_2:1423324_AT pinin mm
MOUSE430_2:1423324_AT pinin mm
MU19KSUBA:TC17434_AT Pinin (Pnn), mRNA mm
MU19KSUBA:TC17434_G_AT Pinin (Pnn), mRNA mm
MU19KSUBA:TC17435_AT Pinin (Pnn), mRNA mm
MU19KSUBC:TC41262_AT Pinin (Pnn), mRNA mm
RG-U34A:RC_AI639151_AT similar to pinin rn
RG-U34C:RC_AI171064_AT similar to pinin rn
RAE230A:1383336_AT similar to pinin rn
RAT230_2:1383336_AT similar to pinin rn
RAE230A:1374111_AT similar to pinin rn
RAT230_2:1374111_AT similar to pinin rn
RAE230B:1396463_AT similar to pinin rn
RAT230_2:1396463_AT similar to pinin rn
RAE230B:1380001_AT similar to pinin rn
RAT230_2:1380001_AT similar to pinin rn
Protein Similarities
Method ID Description E-Value
blast CAC42335 Hypothetical protein R186.7 [Caenorhabditis elegans] ref|NP_506247.1| R186.7 [Caenorhabditis elegans] 1.0E-151
blast CAE64703 Hypothetical protein CBG09489 [Caenorhabditis briggsae] 1.0E-112
Protein Domains
Database ID Description E-Value
Pfam IPR006786 EMBL-EBI Pinin/SDK/memA protein 5.8E-10
Sequence
Target Sequence 
>C. ELEGANS:190700_S_AT
aatcgtcgtctattttctaatctgataatgggaactttgagttctttcaaaaagactgaa
aagaaaactactcagcaagaaaagcaagaagaagttgagaaaaagcttgaagaaaccaag
aagaaggatttcgaatcgagaaaagaagagaaacacgatctcctcaacaaacgacgcgag
caggagaaggaactgaaaagtcttcagcgaaagaaagcattgatccagtacgccgaacac
catgccaatcaattaaagcttatgaagggctggataaagactacgacaagcccacatatt
ttctggcaaccggtcaagcataccgttcgatcgttggagttgaagcaagccacggagaga
caactcgatgatcaaattgcggatcgcgaagaacaactgaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATCGTCGTCTATTTTCTAATCTGA 385 169 1342 Antisense
GAAGAGAAACACGATCTCCTCAACA 404 339 1486 Antisense
GATCTCCTCAACAAACGACGCGAGC 203 419 1498 Antisense
GAAAGCATTGATCCAGTACGCCGAA 689 357 1554 Antisense
GCCGAACACCATGCCAATCAATTAA 366 285 1573 Antisense
TAAAGACTACGACAAGCCCACATAT 331 639 1616 Antisense
GCCCACATATTTTCTGGCAACCGGT 429 285 1631 Antisense
GGCAACCGGTCAAGCATACCGTTCG 702 531 1646 Antisense
GCATACCGTTCGATCGTTGGAGTTG 300 303 1659 Antisense
GAAGCAAGCCACGGAGAGACAACTC 483 341 1683 Antisense
TGCGGATCGCGAAGAACAACTGAAA 54 579 1719 Antisense
Sequence Source Affymetrix Proprietary Database