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[190699_at] major sperm protein like

Description C36H8.1 /REP_DB=WormBase Gene ID /WP=CE05380 /TR=Q18503 /GB=CAA93481.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=major sperm protein like
Cluster 6grp_total > 89      4grp_total > 27      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 74
1 2 3 4 range
A 16.2
(-3)
A 		62
(1.1)
A 		50.4
(0.1)
A 		83
(3)
A 		67
B 40.4
(3)
A 		32.6
(1.5)
A 		11.5
(-2.6)
A 		9.5
(-3)
A 		31
C 39
(-1.2)
A 		41.2
(-0.9)
A 		22.1
(-3)
A 		77.9
(3)
A 		56
avr 31.9
(-2.2) 		45.3
(0.6) 		28
(-3) 		56.8
(3) 		29

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 310
1 2 3 4 5 6 range
A 17
(-3)
A 		74.7
(-1.8)
A 		33.4
(-2.6)
A 		15.2
(-3)
A 		152.2
(-0.2)
P 		312.6
(3)
P 		297
B 26.4
(-3)
A 		49
(-2.3)
A 		44.6
(-2.4)
A 		40.5
(-2.5)
A 		136.5
(0.6)
P 		209
(3)
P 		183
C 28.2
(-2.2)
A 		87
(-0.5)
A 		2.6
(-3)
A 		31.6
(-2.1)
A 		204.8
(3)
P 		186.6
(2.5)
P 		202
avr 23.9
(-3) 		70.2
(-1.7) 		26.9
(-2.9) 		29.1
(-2.9) 		164.5
(1) 		236.1
(3) 		212
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 5.9
(-3)
A 		13.5
(3)
A 		13.2
(2.8)
A 		12.2
(2)
A 		8
B 12.9
(3)
A 		8
(0.3)
A 		2.7
(-2.6)
A 		2
(-3)
A 		11
C 12.9
(2.8)
A 		11.9
(1.7)
A 		7.7
(-3)
A 		13.1
(3)
A 		5
avr 10.6
(2.1) 		11.1
(3) 		7.9
(-3) 		9.1
(-0.8) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 77
1 2 3 4 5 6 range
A 3.1
(-3)
A 		26.6
(-1.1)
A 		7.3
(-2.7)
A 		3.9
(-2.9)
A 		45.9
(0.5)
P 		76.1
(3)
P 		73
B 9.2
(-3)
A 		16.3
(-2.4)
A 		10.8
(-2.9)
A 		10.7
(-2.9)
A 		55.5
(1)
P 		77.9
(3)
P 		69
C 10.5
(-2.1)
A 		26.6
(-0.6)
A 		0.7
(-3)
A 		6.4
(-2.5)
A 		66.3
(3)
P 		62.5
(2.7)
P 		66
avr 7.6
(-2.9) 		23.2
(-1.5) 		6.3
(-3) 		7
(-2.9) 		55.9
(1.5) 		72.2
(3) 		66
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190699_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8483
Sequence Type Exemplar sequence
Representative Public ID C36H8.1 NCBI
Target Description C36H8.1 /REP_DB=WormBase Gene ID /WP=CE05380 /TR=Q18503 /GB=CAA93481.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=major sperm protein like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070033(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070033 NCBI Caenorhabditis elegans C36H8.1 (C36H8.1) mRNA, complete cds. 11/11 None
SNAP00000044130 ENSEMBL cdna:SNAP chromosome:CEL140:IV:12743065:12744709:-1 11/11 None
GENEFINDER00000044133 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:12743065:12744709:-1 11/11 None
C36H8.1 ENSEMBL cdna:known chromosome:CEL140:IV:12743065:12744709:-1 gene:C36H8.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:12743070-12744715(-) 93.79 100.0
Public Domain and Genome References
Gene Title major sperm protein like
Ensembl C36H8.1
Entrez Gene 178230 Entrez gene
SwissProt Q18503 EMBL-EBI
WormBase CE05380 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5198 structural molecule activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA93481 Hypothetical protein C36H8.1 [Caenorhabditis elegans] ref|NP_502434.1| C36H8.1 [Caenorhabditis elegans] 1.0E-92
blast CAE58460 Hypothetical protein CBG01600 [Caenorhabditis briggsae] 8.0E-67
blast AAK18877 Hypothetical protein B0496.6 [Caenorhabditis elegans] ref|NP_501182.1| B0496.6 [Caenorhabditis elegans] 3.0E-32
Protein Domains
Database ID Description E-Value
Pfam IPR000535 EMBL-EBI Major sperm protein (MSP) domain 8.0E-28
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_502434.1 1 66-85
C36H8.1 1 66-85
SNAP00000044130 1 66-85
GENEFINDER00000044133 1 66-85
Sequence
Target Sequence 
>C. ELEGANS:190699_AT
cctgtggaacagattgccccaccaccagctccggttcaggatccagctcctgcaccagtc
gaaccatctgatcctgctccaccgtcgaagcttccatctccatcaaagagttgcacggat
cttgctggaggatctcaacgtttcaaaaccggaccacacccaatgcaatcttcatccttc
cacaatttgaagtcggaatttgatggtttcaattcagctattagccctggccacaatttg
aatgatgttctgttccgcccgatggataagattgtgttcaatgctccattcgactttgaa
aatctgacatatcacatgagagtttccaacaacagccgtcaccgcattgcctacgcaatc
aagggaaactcggtgccccgtgtcatggcttaccccgcatttggaatcttggaactcgga
gaaggacgaatcattgctgtgtcggtgcaaaagtttgattggaatgattttgagtacaac
aaggatcgtatcgctttcgactacgttttgctgccggattccaataaggagaaggcgttc
tcgatgagtatgttccagcattcggactcgaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCTGTGGAACAGATTGCCCCACCAC 530 265 661 Antisense
GAAGCTTCCATCTCCATCAAAGAGT 22 343 747 Antisense
GAGTTGCACGGATCTTGCTGGAGGA 587 397 768 Antisense
CAATCTTCATCCTTCCACAATTTGA 397 181 826 Antisense
CAATTCAGCTATTAGCCCTGGCCAC 707 179 870 Antisense
ATTTGAATGATGTTCTGTTCCGCCC 88 19 896 Antisense
GATTGTGTTCAATGCTCCATTCGAC 471 435 930 Antisense
TGAGAGTTTCCAACAACAGCCGTCA 249 567 977 Antisense
TTACCCCGCATTTGGAATCTTGGAA 407 681 1050 Antisense
TATCGCTTTCGACTACGTTTTGCTG 325 659 1149 Antisense
GTATGTTCCAGCATTCGGACTCGAA 707 453 1208 Antisense
Sequence Source Affymetrix Proprietary Database