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[190696_at] mRNA splicing protein

Description Y110A7A.8 /REP_DB=WormBase Gene ID /WP=CE24126 /TR=Q9N592 /GB=AAF60425.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation /DEF=mRNA splicing protein
Cluster 6grp_highest_10_10 > 57      6grp_high1_10_10 > 65      4grp_highest_8_8 > 17      4grp_high_8_8 > 61      6grp_highest_nonorm > 75      6grp_total > 65      4grp_total > 58      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 415
1 2 3 4 range
A 683.6
(-3)
P 		943.6
(3)
P 		782.1
(-0.7)
P 		707.5
(-2.4)
P 		260
B 767.6
(2.2)
P 		722.2
(1.2)
P 		806
(3)
P 		529
(-3)
P 		277
C 689.7
(-1.3)
P 		657.1
(-2.1)
P 		857.7
(3)
P 		623.4
(-3)
P 		234
avr 713.6
(-0.1) 		774.3
(1.7) 		815.3
(3) 		620
(-3) 		195

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 470
1 2 3 4 5 6 range
A 798
(0)
P 		679.3
(-2.9)
P 		915.4
(3)
P 		676.7
(-3)
P 		734.2
(-1.6)
P 		854.8
(1.5)
P 		239
B 830.8
(-0.8)
P 		678
(-3)
P 		1087.8
(3)
P 		733.8
(-2.2)
P 		762
(-1.8)
P 		1031.4
(2.2)
P 		410
C 617.8
(-3)
P 		737.9
(-1.2)
P 		767.8
(-0.8)
P 		938.2
(1.7)
P 		775.6
(-0.7)
P 		1027.6
(3)
P 		410
avr 748.9
(-1.9) 		698.4
(-3) 		923.7
(2) 		782.9
(-1.1) 		757.3
(-1.7) 		971.3
(3) 		273
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 195
1 2 3 4 range
A 248.9
(3)
P 		204.8
(1.2)
P 		204.5
(1.2)
P 		103.6
(-3)
P 		145
B 244.8
(3)
P 		178.4
(-0)
P 		186.8
(0.4)
P 		112.7
(-3)
P 		132
C 228.3
(0.8)
P 		188.9
(-0.4)
P 		298.9
(3)
P 		105.1
(-3)
P 		194
avr 240.7
(3) 		190.7
(0.8) 		230.1
(2.5) 		107.1
(-3) 		134

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 238
1 2 3 4 5 6 range
A 147.1
(-3)
P 		241.6
(3)
P 		199.4
(0.3)
P 		171.6
(-1.4)
P 		221.6
(1.7)
P 		208.1
(0.9)
P 		95
B 289.1
(-0)
P 		225.7
(-2)
P 		264.2
(-0.8)
P 		194.4
(-3)
P 		309.6
(0.6)
P 		384.6
(3)
P 		190
C 229
(-1.4)
P 		225.2
(-1.6)
P 		195.4
(-2.7)
P 		188.7
(-3)
P 		251
(-0.6)
P 		344
(3)
P 		155
avr 221.7
(-1.3) 		230.8
(-0.8) 		219.7
(-1.4) 		184.9
(-3) 		260.7
(0.6) 		312.2
(3) 		127
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190696_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1966
Sequence Type Exemplar sequence
Representative Public ID Y110A7A.8 NCBI
Target Description Y110A7A.8 /REP_DB=WormBase Gene ID /WP=CE24126 /TR=Q9N592 /GB=AAF60425.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation /DEF=mRNA splicing protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059126(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059126 NCBI Caenorhabditis elegans Y110A7A.8 (Y110A7A.8) mRNA, complete cds. 11/11 None
SNAP00000029210 ENSEMBL cdna:SNAP chromosome:CEL140:I:5127853:5129537:1 11/11 None
GENEFINDER00000029241 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:5127853:5129537:1 11/11 None
Y110A7A.8.2 ENSEMBL cdna:known chromosome:CEL140:I:5127829:5129608:1 gene:Y110A7A.8 11/11 None
Y110A7A.8.1 ENSEMBL cdna:known chromosome:CEL140:I:5127831:5129608:1 gene:Y110A7A.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:5127852-5129537(+) 100.0 100.0
Public Domain and Genome References
Gene Title mRNA splicing protein
Ensembl Y110A7A.8
Entrez Gene 172146 Entrez gene
SwissProt Q9N592 EMBL-EBI
WormBase CE24126 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:264221_S_AT pre-mRNA processing ribonucleoprotein binding region-containing protein at
ATGENOME1:13167_AT pre-mRNA processing ribonucleoprotein binding region-containing protein at
CANINE_2:CFA.1776.1.A1_AT PRP31 pre-mRNA processing factor 31 homolog (yeast) cfa
CANINE_2:CFA.1776.1.A1_S_AT PRP31 pre-mRNA processing factor 31 homolog (yeast) cfa
CANINE_2:CFA.1776.2.S1_S_AT PRP31 pre-mRNA processing factor 31 homolog (yeast) cfa
CANINE_2:CFAAFFX.4926.1.S1_AT PRP31 pre-mRNA processing factor 31 homolog (yeast) cfa
DROSOPHILA_2:1633113_AT dm
DROSGENOME1:154940_AT dm
HG-U133A:202407_S_AT PRP31 pre-mRNA processing factor 31 homolog (yeast) hs
HG-U133_PLUS_2:202407_S_AT PRP31 pre-mRNA processing factor 31 homolog (yeast) hs
HG-U133A_2:202407_S_AT PRP31 pre-mRNA processing factor 31 homolog (yeast) hs
HG-U133A:202408_S_AT PRP31 pre-mRNA processing factor 31 homolog (yeast) hs
HG-U133_PLUS_2:202408_S_AT PRP31 pre-mRNA processing factor 31 homolog (yeast) hs
HG-U133A_2:202408_S_AT PRP31 pre-mRNA processing factor 31 homolog (yeast) hs
HU35KSUBA:RC_AA401258_AT PRP31 pre-mRNA processing factor 31 homolog (yeast) hs
U133_X3P:G7661653_3P_A_AT PRP31 pre-mRNA processing factor 31 homolog (yeast) hs
U133_X3P:HS.183438.2.A1_3P_AT PRP31 pre-mRNA processing factor 31 homolog (yeast) hs
U133_X3P:HS.183438.0.A1_3P_A_AT PRP31 pre-mRNA processing factor 31 homolog (yeast) hs
HG-U133A_2:214380_AT PRP31 pre-mRNA processing factor 31 homolog (yeast) hs
HG-U133_PLUS_2:214380_AT PRP31 pre-mRNA processing factor 31 homolog (yeast) hs
HG-U133A:214380_AT PRP31 pre-mRNA processing factor 31 homolog (yeast) hs
HG-U95AV2:40905_S_AT PRP31 pre-mRNA processing factor 31 homolog (yeast) hs
HG-U95AV2:40904_AT PRP31 pre-mRNA processing factor 31 homolog (yeast) hs
HU35KSUBA:AA431277_AT PRP31 pre-mRNA processing factor 31 homolog (yeast) hs
HU35KSUBA:RC_AA427537_AT PRP31 pre-mRNA processing factor 31 homolog (yeast) hs
MU11KSUBA:AA190114_S_AT PRP31 pre-mRNA processing factor 31 homolog (yeast) mm
MG-U74AV2:103885_AT PRP31 pre-mRNA processing factor 31 homolog (yeast) mm
MG-U74CV2:170956_AT PRP31 pre-mRNA processing factor 31 homolog (yeast) mm
MOE430A:1453005_AT PRP31 pre-mRNA processing factor 31 homolog (yeast) mm
MOUSE430A_2:1453005_AT PRP31 pre-mRNA processing factor 31 homolog (yeast) mm
MOUSE430_2:1453005_AT PRP31 pre-mRNA processing factor 31 homolog (yeast) mm
MOE430A:1448633_AT PRP31 pre-mRNA processing factor 31 homolog (yeast) mm
MOUSE430A_2:1448633_AT PRP31 pre-mRNA processing factor 31 homolog (yeast) mm
MOUSE430_2:1448633_AT PRP31 pre-mRNA processing factor 31 homolog (yeast) mm
MOE430B:1457083_AT PRP31 pre-mRNA processing factor 31 homolog (yeast) mm
MOUSE430_2:1457083_AT PRP31 pre-mRNA processing factor 31 homolog (yeast) mm
MG-U74CV2:166778_I_AT PRP31 pre-mRNA processing factor 31 homolog (yeast) (Prpf31), mRNA mm
MU19KSUBA:TC17272_AT PRP31 pre-mRNA processing factor 31 homolog (yeast) (Prpf31), mRNA mm
MU19KSUBB:TC31116_AT PRP31 pre-mRNA processing factor 31 homolog (yeast) (Prpf31), mRNA mm
MU19KSUBB:TC31116_G_AT PRP31 pre-mRNA processing factor 31 homolog (yeast) (Prpf31), mRNA mm
MU19KSUBB:TC32430_AT PRP31 pre-mRNA processing factor 31 homolog (yeast) (Prpf31), mRNA mm
Protein Similarities
Method ID Description E-Value
blast AAF60425 Hypothetical protein Y110A7A.8 [Caenorhabditis elegans] ref|NP_491527.1| Y110A7A.8 [Caenorhabditis elegans] 0.0
blast CAE65743 Hypothetical protein CBG10828 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002687 EMBL-EBI Pre-mRNA processing ribonucleoprotein, binding region 2.3E-42
Sequence
Target Sequence 
>C. ELEGANS:190696_AT
tcaacacgagtcatccaacggagaaaaaggcgcggaatttctggcgttggtggaaagtaa
atttgaaaaaatgttggagccaccaccagtgaaagctaacaaagcgcttccaaaaccttt
ggataaggcaagtaaaaaacgtggaggacgtcgaacaagaaagatgaaggaacgcctcgg
aatgacggatcttcggaaaagtgccaatcgcatgaactttggagaattgggagaagatgt
aatgcaagagcacatgggattcgatattgggcaggtgaagaccggaaatgtgactggtgg
aagaatccgaacagccgcagtggatcagaagaccagagcaagaatgtcgcaaaagatgat
gcggcagatggagagacagaaagcagctggaggaatgacaagtattcgaagcaaaatggc
gggaactgcgtcatctgtcacgttcacaccaattcaaggtctagagattatcaatccagc
tgcacaagaacagcaacaatgttcatcgacttcaaactatttctcctcgtct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCAACACGAGTCATCCAACGGAGAA 550 629 960 Antisense
AAGGCGCGGAATTTCTGGCGTTGGT 566 161 986 Antisense
AAATGTTGGAGCCACCACCAGTGAA 669 119 1028 Antisense
GCTAACAAAGCGCTTCCAAAACCTT 697 299 1054 Antisense
GAACGCCTCGGAATGACGGATCTTC 299 347 1129 Antisense
GGATCTTCGGAAAAGTGCCAATCGC 116 511 1146 Antisense
GCAAGAGCACATGGGATTCGATATT 236 321 1203 Antisense
GAATCCGAACAGCCGCAGTGGATCA 222 329 1262 Antisense
AAATGGCGGGAACTGCGTCATCTGT 275 121 1373 Antisense
GCAACAATGTTCATCGACTTCAAAC 299 319 1452 Antisense
GACTTCAAACTATTTCTCCTCGTCT 287 371 1467 Antisense
Sequence Source Affymetrix Proprietary Database