[Home] | [Total List]

[190694_s_at]

Description F56D12.1 /REP_DB=WormBase Gene ID /WP=CE25909 /TR=O16648 /GB=AAB66116.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=aldehyde dehydrogenase
Cluster 6grp_highest_10_10 > 20      6grp_high1_10_10 > 04      6grp_highest_nonorm > 41      6grp_total > 13      4grp_total > 60      6grp_highest_sub > De      6grp_cgc > 31      6grp_high1_sub > De      6grp_cgc_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 548
1 2 3 4 range
A 725.1
(3)
P 		681.7
(2.4)
P 		706.7
(2.8)
P 		271.1
(-3)
M 		454
B 641
(0.8)
P 		503.5
(-3)
P 		720.7
(3)
P 		526.8
(-2.4)
M 		217
C 625.6
(-0.2)
P 		719.6
(1.4)
P 		819.5
(3)
P 		455.2
(-3)
M 		364
avr 663.9
(1.5) 		634.9
(0.9) 		749
(3) 		417.7
(-3) 		331

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 530
1 2 3 4 5 6 range
A 716.7
(1.3)
P 		824.9
(3)
P 		587.4
(-0.6)
P 		657.6
(0.4)
P 		572.3
(-0.9)
P 		431.6
(-3)
P 		393
B 756.6
(3)
P 		736.8
(2.6)
P 		691.7
(1.5)
P 		574.8
(-1.1)
P 		626.5
(0.1)
P 		490.3
(-3)
P 		266
C 898.4
(3)
P 		742.2
(1.2)
P 		820.6
(2.1)
P 		603.1
(-0.3)
P 		617.1
(-0.2)
P 		368
(-3)
P 		530
avr 790.6
(3) 		768
(2.6) 		699.9
(1.5) 		611.8
(0) 		605.3
(-0.1) 		430
(-3) 		361
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 246
1 2 3 4 range
A 264
(3)
P 		148
(-0.1)
P 		184.8
(0.9)
P 		39.7
(-3)
M 		224
B 204.4
(3)
P 		124.4
(-2.2)
P 		167
(0.6)
P 		112.3
(-3)
M 		92
C 207.1
(0.7)
P 		206.9
(0.7)
P 		285.6
(3)
P 		76.8
(-3)
M 		209
avr 225.2
(3) 		159.8
(0.4) 		212.5
(2.5) 		76.3
(-3) 		149

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 228
1 2 3 4 5 6 range
A 132.1
(-2.1)
P 		293.4
(3)
P 		127.9
(-2.3)
P 		166.8
(-1)
P 		172.7
(-0.8)
P 		105.1
(-3)
P 		188
B 263.3
(3)
P 		245.3
(2)
P 		168
(-2.1)
P 		152.2
(-3)
P 		254.6
(2.5)
P 		182.8
(-1.3)
P 		111
C 333
(3)
P 		226.5
(-0)
P 		208.9
(-0.5)
P 		121.3
(-3)
P 		199.7
(-0.8)
P 		123.2
(-2.9)
P 		212
avr 242.8
(2.4) 		255.1
(3) 		168.3
(-1.4) 		146.8
(-2.5) 		209
(0.7) 		137
(-3) 		118
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 190694_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4589
Sequence Type Exemplar sequence
Representative Public ID F56D12.1 NCBI
Target Description F56D12.1 /REP_DB=WormBase Gene ID /WP=CE25909 /TR=O16648 /GB=AAB66116.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=aldehyde dehydrogenase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001027041(11), NM_061545(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001027041 NCBI Caenorhabditis elegans ALdehyde deHydrogenase family member (alh-6) (alh-6) mRNA, complete cds. 11/11 None
NM_061545 NCBI Caenorhabditis elegans ALdehyde deHydrogenase family member (alh-6) (alh-6) mRNA, complete cds. 11/11 None
SNAP00000013795 ENSEMBL cdna:SNAP chromosome:CEL140:II:1306391:1309757:-1 11/11 None
GENEFINDER00000013806 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:1306391:1309757:-1 10/11 None
F56D12.1c.2 ENSEMBL cdna:known chromosome:CEL140:II:1306264:1309770:-1 gene:F56D12.1 11/11 None
F56D12.1c.1 ENSEMBL cdna:known chromosome:CEL140:II:1306264:1309760:-1 gene:F56D12.1 11/11 None
F56D12.1a ENSEMBL cdna:known chromosome:CEL140:II:1306266:1309757:-1 gene:F56D12.1 11/11 None
F56D12.1b ENSEMBL cdna:known chromosome:CEL140:II:1306311:1309757:-1 gene:F56D12.1 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_182151 8/11 Cross Hyb Matching Probes None
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
173510 3 2 NM_001027041 190694_s_at (11)
NM_061545 190694_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:1306389-1310173(-) 100.0 100.0
Public Domain and Genome References
Ensembl F56D12.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAT92072 Aldehyde dehydrogenase protein 6, isoform c [Caenorhabditis elegans] ref|NP_001022212.1| ALdehyde deHydrogenase family member (alh-6) [Caenorhabditis elegans] 0.0
blast AAO38633 Aldehyde dehydrogenase protein 6, isoform b [Caenorhabditis elegans] ref|NP_871951.1| ALdehyde deHydrogenase family member (alh-6) [Caenorhabditis elegans] 0.0
blast AAB66116 Aldehyde dehydrogenase protein 6, isoform a [Caenorhabditis elegans] ref|NP_493946.1| ALdehyde deHydrogenase family member (alh-6) [Caenorhabditis elegans] 0.0
blast CAE62916 Hypothetical protein CBG07110 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002086 EMBL-EBI Aldehyde dehydrogenase 9.0E-80
Pfam IPR002086 EMBL-EBI Aldehyde dehydrogenase 2.6E-72
Pfam IPR002086 EMBL-EBI Aldehyde dehydrogenase 6.4E-47
Sequence
Target Sequence 
>C. ELEGANS:190694_S_AT
gtctttctgtcggctgtgatcgatgataaggcgtttgccaggctcaaggcctacattgac
tttgcgaaaaccggagccgacggagcaaatgtggtgctcggcggaaaatgtgacgacaaa
acgggatacttcatcgagccgaccctgatcactgtgacggatccgaagagcaagcttctc
actgaggaaatgttcggaccggtggtgacggtactggtctacgaggattcgaaggttgat
gaggtgctcgcgactgtgaaagacgcgacaccttatgggctgactggcgccgttttttcg
caggataaggagttcctttatagagctcgcgatgttctccgcgacgccgtcggcaacatg
tacctcaacgacaaatcaactggatcaatcgtcggccagcagccattcggaggctccaga
ttgtccggaaccaatgataaggccggtggcccccactatgggctccgatggacctcgccg
ctgacgattaaggaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCTTTCTGTCGGCTGTGATCGATG 679 467 1348 Antisense
TAAGGCGTTTGCCAGGCTCAAGGCC 180 637 1374 Antisense
GGCTCAAGGCCTACATTGACTTTGC 370 537 1388 Antisense
AACGGGATACTTCATCGAGCCGACC 463 143 1467 Antisense
GACCCTGATCACTGTGACGGATCCG 443 381 1488 Antisense
CGGTGGTGACGGTACTGGTCTACGA 314 241 1547 Antisense
TGAGGTGCTCGCGACTGTGAAAGAC 483 567 1587 Antisense
TGAAAGACGCGACACCTTATGGGCT 40 573 1604 Antisense
ATAGAGCTCGCGATGTTCTCCGCGA 244 23 1667 Antisense
GCAGCCATTCGGAGGCTCCAGATTG 58 315 1746 Antisense
ACCTCGCCGCTGACGATTAAGGAGA 427 87 1819 Antisense
Sequence Source Affymetrix Proprietary Database