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[190693_at] glucuronosyltransferase

Description K08B4.3 /REP_DB=WormBase Gene ID /WP=CE18032 /TR=Q9TYY5 /GB=AAC68981.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=glucuronosyltransferase
Cluster 6grp_highest_10_10 > 50      6grp_high1_10_10 > 06      6grp_highest_nonorm > 90      6grp_total > 05      4grp_total > 51      6grp_highest_sub > De      6grp_cgc > 22      6grp_high1_sub > De      6grp_cgc_sub > De      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 140
1 2 3 4 range
A 91.2
(1.9)
P 		105.2
(3)
P 		91.1
(1.8)
P 		31.8
(-3)
A 		73
B 110.5
(1.5)
P 		113.1
(3)
P 		102.5
(-3)
P 		112.9
(2.9)
A 		11
C 88.7
(-0.9)
P 		171.5
(3)
P 		147.7
(1.9)
P 		43.8
(-3)
A 		128
avr 96.8
(0) 		129.9
(3) 		113.8
(1.6) 		62.8
(-3) 		67

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 238
1 2 3 4 5 6 range
A 279.1
(3)
P 		149.4
(-0.4)
P 		178.2
(0.4)
P 		139.6
(-0.6)
P 		99.6
(-1.7)
P 		49.2
(-3)
P 		230
B 287
(3)
P 		213.6
(0.7)
P 		145.1
(-1.4)
P 		130.7
(-1.9)
P 		114.3
(-2.4)
P 		94
(-3)
P 		193
C 273.9
(3)
P 		190.4
(0.7)
P 		93.5
(-1.9)
P 		136.4
(-0.7)
P 		91.4
(-1.9)
P 		52.4
(-3)
P 		222
avr 280
(3) 		184.5
(0.3) 		138.9
(-0.9) 		135.6
(-1) 		101.8
(-2) 		65.2
(-3) 		215
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 47
1 2 3 4 range
A 33.2
(3)
P 		22.8
(0.8)
P 		23.8
(1)
P 		4.7
(-3)
A 		29
B 35.2
(3)
P 		27.9
(-0.8)
P 		23.8
(-3)
P 		24.1
(-2.8)
A 		11
C 29.4
(-0)
P 		49.3
(2.7)
P 		51.5
(3)
P 		7.4
(-3)
A 		44
avr 32.6
(2.8) 		33.3
(3) 		33
(2.9) 		12.1
(-3) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 90
1 2 3 4 5 6 range
A 51.5
(2.8)
P 		53.1
(3)
P 		38.8
(0.9)
P 		35.4
(0.4)
P 		30
(-0.4)
P 		12
(-3)
P 		41
B 99.9
(3)
P 		71.1
(0.4)
P 		35.2
(-2.9)
P 		34.6
(-3)
P 		46.4
(-1.9)
P 		35
(-3)
P 		65
C 101.5
(3)
P 		58.1
(-0.1)
P 		23.8
(-2.6)
P 		27.4
(-2.3)
P 		29.6
(-2.1)
P 		17.6
(-3)
P 		84
avr 84.3
(3) 		60.8
(0.8) 		32.6
(-1.9) 		32.5
(-1.9) 		35.3
(-1.7) 		21.5
(-3) 		63
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190693_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10979
Sequence Type Exemplar sequence
Representative Public ID K08B4.3 NCBI
Target Description K08B4.3 /REP_DB=WormBase Gene ID /WP=CE18032 /TR=Q9TYY5 /GB=AAC68981.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=glucuronosyltransferase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068511(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068511 NCBI Caenorhabditis elegans K08B4.3 (glucuronosyltransferase) mRNA, complete cds. 11/11 None
SNAP00000004903 ENSEMBL cdna:SNAP chromosome:CEL140:IV:6076754:6078994:-1 11/11 None
GENEFINDER00000004916 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:6076754:6083575:-1 11/11 None
K08B4.3 ENSEMBL cdna:known chromosome:CEL140:IV:6076754:6079928:-1 gene:K08B4.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:6076759-6079934(-) 96.96 100.0
Public Domain and Genome References
Gene Title glucuronosyltransferase
Gene Symbol ugt-19
Ensembl K08B4.3
Entrez Gene 187129 Entrez gene
SwissProt Q9TYY5 EMBL-EBI
WormBase CE34922 Wormbase
Functional Annotations
Ortholog
ID Title Organism
DROSOPHILA_2:1641242_AT dm
DROSGENOME1:149665_AT dm
RT-U34:D83796_S_AT UDP glycosyltransferase 1 family, polypeptide A8 rn
RG-U34A:D83796_S_AT UDP glycosyltransferase 1 family, polypeptide A8 rn
RT-U34:J05132_S_AT UDP glycosyltransferase 1 family, polypeptide A8 rn
RG-U34A:J05132_S_AT UDP glycosyltransferase 1 family, polypeptide A8 rn
RT-U34:J02612MRNA_S_AT UDP glycosyltransferase 1 family, polypeptide A8 rn
RG-U34A:J02612MRNA_S_AT UDP glycosyltransferase 1 family, polypeptide A8 rn
RG-U34A:D38063EXON_AT UDP glycosyltransferase 1 family, polypeptide A8 rn
RG-U34A:S56937_S_AT UDP glycosyltransferase 1 family, polypeptide A8 rn
RAE230A:1370613_S_AT UDP glycosyltransferase 1 family, polypeptide A8 rn
RAT230_2:1370613_S_AT UDP glycosyltransferase 1 family, polypeptide A8 rn
RAE230A:1387759_S_AT UDP glycosyltransferase 1 family, polypeptide A8 rn
RAT230_2:1387759_S_AT UDP glycosyltransferase 1 family, polypeptide A8 rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
8152 metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
16758 transferase activity, transferring hexosyl groups inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC68981 Udp-glucuronosyltransferase protein 19 [Caenorhabditis elegans] ref|NP_500912.2| K08B4.3 [Caenorhabditis elegans] 0.0
blast AAC68980 Udp-glucuronosyltransferase protein 20 [Caenorhabditis elegans] ref|NP_500913.1| K08B4.4 [Caenorhabditis elegans] 0.0
blast CAE61607 Hypothetical protein CBG05526 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 2.9E-30
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 3.2E-28
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 8.9E-14
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 3.2E-18
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 3.2E-28
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_500912.2 2 7-29,485-507
K08B4.3 2 7-29,485-507
SNAP00000004903 1 431-453
GENEFINDER00000004916 3 481-503,510-532,1056-1078
Sequence
Target Sequence 
>C. ELEGANS:190693_AT
tctaccttggagactggcttccacaaaatgaacttcttgctgataaaagattaaatgttt
ttgtaactcatggaggtcttggctcagttactgaactttccatgatgggtactcctgctg
ttatgatcccactctttgctgatcaatccagaaatggtcaaatgcttaaacgtcacggag
gggtagctgttctcaagaaaactgatttatctgatgcaaaacttgttcaatccacgattg
aagaggttttgaataatccagaatatagaaaaagtgcagaacgagtggctgaaatgttga
gaaatcagccaacaaatccaaaagaaacatttttaaaatatgtggaattcacagcgagat
ttggaaaactgccatcaatggataattatggaagacaactcacatttgttcaatatttct
tcttggacattatctctattatcagtctgataactgtggtgtttttgtacatttcttac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTACCTTGGAGACTGGCTTCCACA 469 613 1208 Antisense
TATGATCCCACTCTTTGCTGATCAA 351 657 1329 Antisense
GGTCAAATGCTTAAACGTCACGGAG 174 501 1363 Antisense
GTCACGGAGGGGTAGCTGTTCTCAA 583 463 1379 Antisense
ATCTGATGCAAAACTTGTTCAATCC 589 33 1416 Antisense
GAGAAATCAGCCAACAAATCCAAAA 400 393 1506 Antisense
TGTGGAATTCACAGCGAGATTTGGA 633 553 1548 Antisense
GGAAGACAACTCACATTTGTTCAAT 434 531 1597 Antisense
TATTTCTTCTTGGACATTATCTCTA 121 663 1621 Antisense
ACATTATCTCTATTATCAGTCTGAT 383 105 1634 Antisense
TGTGGTGTTTTTGTACATTTCTTAC 296 555 1662 Antisense
Sequence Source Affymetrix Proprietary Database