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[190692_at] serine/threonine kinase

Description W07A12.4 /REP_DB=WormBase Gene ID /WP=CE20162 /TR=Q9XVW2 /GB=CAA92705.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=serine-threonine kinase
Cluster 6grp_highest_10_10 > 29      6grp_high1_10_10 > 91      4grp_highest_8_8 > 60      4grp_high_8_8 > 26      6grp_highest_nonorm > 63      6grp_total > 91      4grp_total > 38      6grp_highest_sub > 04_05      6grp_high1_sub > 05      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 285
1 2 3 4 range
A 390.8
(3)
P 		304.8
(0.2)
P 		210.4
(-2.8)
P 		204.9
(-3)
P 		186
B 401.1
(3)
P 		288.1
(-0.2)
P 		187.8
(-3)
P 		294.3
(-0)
P 		213
C 416.5
(3)
P 		269.1
(-0.1)
P 		131.2
(-3)
P 		288.2
(0.3)
P 		285
avr 402.8
(3) 		287.3
(-0.1) 		176.5
(-3) 		262.5
(-0.7) 		226

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1071
1 2 3 4 5 6 range
A 568.2
(-0.9)
P 		288.1
(-2.4)
P 		189.7
(-3)
P 		902.2
(1)
P 		1251.2
(3)
P 		323.8
(-2.2)
P 		1062
B 517
(-1)
P 		278.3
(-2.4)
P 		180
(-3)
P 		1049.2
(2.3)
P 		1166.6
(3)
P 		294
(-2.3)
P 		987
C 552.5
(-0.7)
P 		311.5
(-2.3)
P 		202
(-3)
P 		1098.4
(2.9)
P 		1114.7
(3)
P 		269.4
(-2.6)
P 		913
avr 545.9
(-0.8) 		292.6
(-2.4) 		190.6
(-3) 		1016.6
(2) 		1177.5
(3) 		295.7
(-2.4) 		987
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 112
1 2 3 4 range
A 142.3
(3)
P 		66.2
(-1.1)
P 		55
(-1.7)
P 		30
(-3)
P 		112
B 127.9
(3)
P 		71.2
(-1)
P 		43.5
(-3)
P 		62.7
(-1.6)
P 		84
C 137.9
(3)
P 		77.4
(-0.9)
P 		45.7
(-3)
P 		48.6
(-2.8)
P 		92
avr 136
(3) 		71.6
(-1.3) 		48.1
(-2.9) 		47.1
(-3) 		89

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 433
1 2 3 4 5 6 range
A 104.7
(-1.9)
P 		102.5
(-1.9)
P 		41.3
(-3)
P 		228.8
(0.3)
P 		377.5
(3)
P 		78.8
(-2.3)
P 		336
B 179.9
(-1.1)
P 		92.6
(-2.3)
P 		43.7
(-3)
P 		277.9
(0.3)
P 		474
(3)
P 		109.6
(-2.1)
P 		430
C 204.8
(-0)
P 		95.1
(-2.2)
P 		51.4
(-3)
P 		220.9
(0.3)
P 		360.7
(3)
P 		90.2
(-2.2)
P 		309
avr 163.1
(-1) 		96.7
(-2.1) 		45.5
(-3) 		242.5
(0.3) 		404.1
(3) 		92.9
(-2.2) 		359
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190692_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3328
Sequence Type Exemplar sequence
Representative Public ID W07A12.4 NCBI
Target Description W07A12.4 /REP_DB=WormBase Gene ID /WP=CE20162 /TR=Q9XVW2 /GB=CAA92705.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=serine-threonine kinase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063550(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063550 NCBI Caenorhabditis elegans W07A12.4 (W07A12.4) mRNA, complete cds. 11/11 None
SNAP00000000166 ENSEMBL cdna:SNAP chromosome:CEL140:II:9148621:9150173:1 11/11 None
GENEFINDER00000000172 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:9148662:9152221:1 11/11 None
W07A12.4 ENSEMBL cdna:known chromosome:CEL140:II:9148353:9152221:1 gene:W07A12.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:9148635-9150196(+) 100.0 100.0
Public Domain and Genome References
Gene Title serine/threonine kinase
Ensembl W07A12.4
Entrez Gene 174454 Entrez gene
SwissProt Q9XVW2 EMBL-EBI
WormBase CE37853 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5515 protein binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA92705 Hypothetical protein W07A12.4 [Caenorhabditis elegans] emb|CAH10844.2| Hypothetical protein W07A12.4 [Caenorhabditis elegans] ref|NP_495951.2| W07A12.4 [Caenorhabditis elegans] 0.0
blast CAE57872 Hypothetical protein CBG00912 [Caenorhabditis briggsae] 0.0
blast CAE57872 Hypothetical protein CBG00912 [Caenorhabditis briggsae] 1.0E-174
blast XP_797580 PREDICTED: similar to btb domain containing like (2J439), partial [Strongylocentrotus purpuratus] 2.0E-86
Protein Domains
Database ID Description E-Value
Pfam IPR000210 EMBL-EBI BTB/POZ domain 5.9E-17
Pfam IPR000210 EMBL-EBI BTB/POZ domain 5.9E-17
Pfam IPR000210 EMBL-EBI BTB/POZ domain 5.9E-17
Sequence
Target Sequence 
>C. ELEGANS:190692_AT
gctccaaaccactcagaacgacgaggaaacactgctggaccacttttggcttttctcctt
cctctgattagattcccatttatgaatggagatgaactgaacgaagttgagaaatccgcg
atttccgaaatgcatccaaaactttttcaaccgccactccttctctcttataaatttaat
gctcttccgctttccaagaaaaaacttcagtcaataataacttacagagatttcaccaag
aaacaatttctacttcgacaatatgaggataaccgttggaatcaaagaatgactgtcgca
aaaacacttttagcatatccgtgcgtagatcatgcgtttacgttcacatcccgatcatca
actgttccaatgaccgaatggaaatggacacttaaacttacaggtttgacattcccaaat
cccacaaaagttgatgttctccggattattctgattgctgaaggaattgatcaatacaga
tcaattgagtatatgcttcaaatagttgatgagaagaaggtgctcctgtccatgtc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCTCCAAACCACTCAGAACGACGAG 431 297 586 Antisense
AACACTGCTGGACCACTTTTGGCTT 35 137 613 Antisense
TTTTCTCCTTCCTCTGATTAGATTC 89 675 636 Antisense
GCATCCAAAACTTTTTCAACCGCCA 282 307 717 Antisense
CCACTCCTTCTCTCTTATAAATTTA 187 275 739 Antisense
ATAAATTTAATGCTCTTCCGCTTTC 165 25 755 Antisense
GATCATGCGTTTACGTTCACATCCC 291 421 913 Antisense
TTCACATCCCGATCATCAACTGTTC 205 687 928 Antisense
GTTTGACATTCCCAAATCCCACAAA 605 451 989 Antisense
GTTCTCCGGATTATTCTGATTGCTG 483 443 1021 Antisense
AGAAGAAGGTGCTCCTGTCCATGTC 677 73 1097 Antisense
Sequence Source Affymetrix Proprietary Database