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[190690_s_at] Transport ATPase like

Description W08D2.5 /REP_DB=WormBase Gene ID /WP=CE06560 /TR=SW:Q27533 /GB=CAA94236.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=Transport ATPase like
Cluster 6grp_highest_10_10 > 64      6grp_high1_10_10 > 46      4grp_high_8_8 > 41      6grp_highest_nonorm > 81      6grp_total > 36      4grp_total > 54      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 202
1 2 3 4 range
A 352.4
(3)
P 		219.7
(-1.1)
P 		160.2
(-3)
P 		161.9
(-2.9)
P 		192
B 340.4
(3)
P 		217.3
(-0.9)
P 		196.1
(-1.6)
P 		150.9
(-3)
P 		190
C 323
(3)
P 		203.6
(-2.2)
P 		270.2
(0.7)
P 		185.2
(-3)
M 		138
avr 338.6
(3) 		213.5
(-1.3) 		208.8
(-1.5) 		166
(-3) 		173

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 144
1 2 3 4 5 6 range
A 302.8
(3)
P 		302.3
(3)
P 		205.7
(-3)
P 		244
(-0.6)
P 		251.1
(-0.2)
P 		298.3
(2.7)
P 		97
B 301.8
(2.6)
P 		303.1
(2.7)
P 		280.8
(1.5)
P 		223.2
(-1.5)
P 		193.7
(-3)
P 		308.8
(3)
P 		115
C 291.9
(0.6)
P 		316.3
(1.9)
P 		266.9
(-0.7)
P 		337.3
(3)
P 		223.6
(-3)
P 		286.8
(0.3)
P 		114
avr 298.8
(2.4) 		307.2
(3) 		251.1
(-1) 		268.2
(0.2) 		222.8
(-3) 		298
(2.3) 		84
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 105
1 2 3 4 range
A 128.3
(3)
P 		47.7
(-1.6)
P 		41.9
(-2)
P 		23.7
(-3)
P 		105
B 108.5
(3)
P 		53.7
(-1.3)
P 		45.4
(-2)
P 		32.2
(-3)
P 		76
C 106.9
(3)
P 		58.5
(-0.8)
P 		94.2
(2)
P 		31.2
(-3)
M 		76
avr 114.6
(3) 		53.3
(-1.3) 		60.5
(-0.8) 		29
(-3) 		86

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 70
1 2 3 4 5 6 range
A 55.8
(-1.9)
P 		107.5
(3)
P 		44.8
(-3)
P 		61.9
(-1.4)
P 		75.8
(-0)
P 		72.6
(-0.3)
P 		63
B 105
(1.9)
P 		100.9
(1.5)
P 		68.2
(-2)
P 		59.1
(-3)
P 		78.7
(-0.9)
P 		115.2
(3)
P 		56
C 108.2
(3)
P 		96.5
(1.3)
P 		67.9
(-3)
P 		67.8
(-3)
P 		72.4
(-2.3)
P 		96
(1.2)
P 		40
avr 89.7
(1.3) 		101.6
(3) 		60.3
(-3) 		62.9
(-2.6) 		75.6
(-0.8) 		94.6
(2) 		41
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 190690_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8782
Sequence Type Exemplar sequence
Representative Public ID W08D2.5 NCBI
Target Description W08D2.5 /REP_DB=WormBase Gene ID /WP=CE06560 /TR=SW:Q27533 /GB=CAA94236.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=Transport ATPase like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069354(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069354 NCBI Caenorhabditis elegans W08D2.5 (W08D2.5) mRNA, complete cds. 11/11 None
SNAP00000011772 ENSEMBL cdna:SNAP chromosome:CEL140:IV:9817684:9821663:-1 11/11 None
GENEFINDER00000011781 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:9817684:9821424:-1 11/11 None
W08D2.5 ENSEMBL cdna:known chromosome:CEL140:IV:9817396:9824606:-1 gene:W08D2.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:9817689-9824527(-) 100.0 100.0
Public Domain and Genome References
Gene Title Transport ATPase like
Ensembl W08D2.5
Entrez Gene 177822 Entrez gene
SwissProt Q27533 EMBL-EBI
WormBase CE32950 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.20799.1.S1_AT similar to Probable cation-transporting ATPase 13A3 (ATPase family homolog up-regulated in senescence cells 1) cfa
DROSOPHILA_2:1630078_A_AT dm
DROSOPHILA_2:1625955_A_AT dm
CHICKEN:GGAAFFX.4428.1.S1_AT similar to Probable cation-transporting ATPase 3 (ATPase family homolog up-regulated in senescence cells 1) gga
CHICKEN:GGAAFFX.4428.2.S1_S_AT similar to Probable cation-transporting ATPase 3 (ATPase family homolog up-regulated in senescence cells 1) gga
CHICKEN:GGAAFFX.4428.3.S1_AT similar to Probable cation-transporting ATPase 3 (ATPase family homolog up-regulated in senescence cells 1) gga
CHICKEN:GGAAFFX.4428.3.S1_S_AT similar to Probable cation-transporting ATPase 3 (ATPase family homolog up-regulated in senescence cells 1) gga
CHICKEN:GGAAFFX.4448.5.S1_S_AT similar to Probable cation-transporting ATPase 3 (ATPase family homolog up-regulated in senescence cells 1) gga
HG-U133_PLUS_2:219558_AT ATPase type 13A3 hs
HG-U133A:219558_AT ATPase type 13A3 hs
HG-U133A_2:219558_AT ATPase type 13A3 hs
HUGENEFL:Z24724_AT ATPase type 13A3 hs
U133_X3P:G13375667_3P_AT ATPase type 13A3 hs
U133_X3P:HS.4934.0.S1_3P_AT ATPase type 13A3 hs
HG-U133A_2:212297_AT ATPase type 13A3 hs
HG-U133_PLUS_2:212297_AT ATPase type 13A3 hs
HG-U133A:212297_AT ATPase type 13A3 hs
HG-U95AV2:34857_AT ATPase type 13A3 hs
HU35KSUBD:RC_AA193360_AT ATPase type 13A3 hs
HG-U95C:61595_AT ATPase type 13A3 hs
HG-U95D:72717_AT ATPase type 13A3 hs
HU35KSUBB:RC_T81301_AT ATPase type 13A3 hs
MG-U74AV2:103667_AT PREDICTED: Mus musculus gene model 542, (NCBI) (Gm542), mRNA mm
MG-U74BV2:105925_AT PREDICTED: Mus musculus gene model 542, (NCBI) (Gm542), mRNA mm
MOUSE430_2:1446285_AT PREDICTED: Mus musculus gene model 542, (NCBI) (Gm542), mRNA mm
MOE430B:1446285_AT PREDICTED: Mus musculus gene model 542, (NCBI) (Gm542), mRNA mm
MU19KSUBB:TC31983_AT PREDICTED: Mus musculus gene model 542, (NCBI) (Gm542), mRNA mm
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6812 cation transport inferred from electronic annotation QuickGO AmiGO
8152 metabolism inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3824 catalytic activity inferred from electronic annotation QuickGO AmiGO
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
15662 ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism inferred from electronic annotation QuickGO AmiGO
16787 hydrolase activity inferred from electronic annotation QuickGO AmiGO
16820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances inferred from electronic annotation QuickGO AmiGO
16887 ATPase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA94236 Hypothetical protein W08D2.5 [Caenorhabditis elegans] ref|NP_501755.2| W08D2.5 [Caenorhabditis elegans] sp|Q27533|YH2M_CAEEL Probable cation-transporting ATPase W08D2.5 in chromosome IV 0.0
blast CAE59982 Hypothetical protein CBG03474 [Caenorhabditis briggsae] 0.0
blast AAP13732 Hypothetical protein Y59H11AR.2b [Caenorhabditis elegans] ref|NP_001023543.1| Y59H11AR.2b [Caenorhabditis elegans] 0.0
blast AAU05561 Hypothetical protein K07E3.7b [Caenorhabditis elegans] ref|NP_001024768.1| K07E3.7b [Caenorhabditis elegans] sp|Q21286|YBF7_CAEEL Probable cation-transporting ATPase K07E3.7 in chromosome X 0.0
Protein Families
Method ID Description E-Value
ec A1A1_HUMAN (P05023) Sodium/potassium-transporting ATPase alpha-1 chain precursor (EC 3.6.3.9) (Sodium pump 1) (Na+/K+ ATPase 1) 1.0E-154
ec A1A1_HUMAN (P05023) Sodium/potassium-transporting ATPase alpha-1 chain precursor (EC 3.6.3.9) (Sodium pump 1) (Na+/K+ ATPase 1) 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR008250 EMBL-EBI E1-E2 ATPase-associated region 5.3E-4
Pfam IPR008250 EMBL-EBI E1-E2 ATPase-associated region 1.8E-5
Pfam IPR005834 EMBL-EBI Haloacid dehalogenase-like hydrolase 4.2E-7
Pfam IPR005834 EMBL-EBI Haloacid dehalogenase-like hydrolase 7.7E-6
Pfam IPR005834 EMBL-EBI Haloacid dehalogenase-like hydrolase 4.2E-7
Pfam IPR005834 EMBL-EBI Haloacid dehalogenase-like hydrolase 7.7E-6
Pfam IPR005834 EMBL-EBI Haloacid dehalogenase-like hydrolase 4.2E-7
Pfam IPR005834 EMBL-EBI Haloacid dehalogenase-like hydrolase 7.7E-6
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_501755.2 11 20-42,180-202,207-229,380-401,416-438,933-955,965-987,999-1021,1050-1072,1085-1107,1122-1151
W08D2.5 11 20-42,180-202,207-229,380-401,416-438,933-955,965-987,999-1021,1050-1072,1085-1107,1122-1151
SNAP00000011772 8 49-70,85-107,602-624,634-656,668-690,719-741,754-776,791-820
GENEFINDER00000011781 8 36-57,72-94,589-611,621-643,655-677,706-728,741-763,778-807
Sequence
Target Sequence 
>C. ELEGANS:190690_S_AT
taatactccagcattctatcgtcttgctcatactccaccaccgacccgacttctatcaat
tgcttcgatgacttctgtcgttggacaattgattataattggtgtcgtacagttcattgt
tttcttctccacatctcaacagccatggttcacaccataccaacctccagtagatgatga
agttgaagataaacgaagtatgcaaggaactgctctcttctgtgtttcaatgttccagta
catcattttggcgcttgtttactcaaaaggaccaccattccgtggaaacttgtggtcgaa
taaaccgatatataaaaagaaaagaagtattgaggctattattgactatgtaccaactac
aaattcggatcacattcgtcgtccatcaatcaacggtgtgacgtcatcgcgaactgaatc
aacgctactttctgctgaaggacaacagctccacatgacaacatcaaaaaatggaaaagg
tggcgagaatccacattctagcgcactctttgaacgactaatttctcgaattggaggaga
acctacatggctgaccaatccaattcctc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAATACTCCAGCATTCTATCGTCTT 417 635 2955 Antisense
GACCCGACTTCTATCAATTGCTTCG 425 381 2997 Antisense
GCTTCGATGACTTCTGTCGTTGGAC 586 305 3016 Antisense
TACAGTTCATTGTTTTCTTCTCCAC 65 645 3062 Antisense
TCCACATCTCAACAGCCATGGTTCA 125 589 3082 Antisense
GTATGCAAGGAACTGCTCTCTTCTG 371 455 3152 Antisense
GCTCTCTTCTGTGTTTCAATGTTCC 404 299 3166 Antisense
AATTCGGATCACATTCGTCGTCCAT 479 177 3316 Antisense
AACGGTGTGACGTCATCGCGAACTG 101 143 3346 Antisense
ATTCTAGCGCACTCTTTGAACGACT 284 9 3449 Antisense
ACATGGCTGACCAATCCAATTCCTC 208 107 3499 Antisense
Sequence Source Affymetrix Proprietary Database