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[190689_s_at] beta-catenin

Description C54D1.6 /REP_DB=WormBase Gene ID /WP=CE08973 /GEN=bar-1 /TR=Q18825 /GB=AAC48154.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=beta-catenin
Cluster 6grp_highest_10_10 > 33      6grp_high1_10_10 > 23      4grp_highest_8_8 > 51      4grp_high_8_8 > 32      6grp_highest_nonorm > 62      6grp_total > 12      4grp_total > 47      6grp_highest_sub > 02      6grp_cgc > 62      6grp_high1_sub > 02      6grp_cgc_sub > 02      6grp_total_sub > Hat      6grp_rule_based > S2      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 218
1 2 3 4 range
A 518.3
(3)
P 		427.5
(-0.6)
P 		367
(-3)
P 		390.4
(-2.1)
P 		151
B 534.6
(3)
P 		397.1
(-1.5)
P 		356.5
(-2.8)
P 		351.9
(-3)
P 		183
C 431.7
(3)
P 		316.2
(-3)
P 		410.5
(1.9)
P 		384.7
(0.6)
P 		116
avr 494.9
(3) 		380.3
(-2.8) 		378
(-2.9) 		375.7
(-3) 		119

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 434
1 2 3 4 5 6 range
A 560.5
(1)
P 		706.4
(3)
P 		465.9
(-0.3)
P 		410.9
(-1.1)
P 		485.2
(-0.1)
P 		273.5
(-3)
P 		433
B 520.6
(0.8)
P 		655.5
(3)
P 		588
(1.9)
P 		520.2
(0.8)
P 		450.4
(-0.3)
P 		279.8
(-3)
P 		376
C 434.5
(-0.3)
P 		637
(3)
P 		541.7
(1.4)
P 		563.7
(1.8)
P 		303.8
(-2.5)
P 		272.4
(-3)
P 		365
avr 505.2
(0.5) 		666.3
(3) 		531.9
(0.9) 		498.3
(0.4) 		413.1
(-0.9) 		275.2
(-3) 		391
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 132
1 2 3 4 range
A 188.7
(3)
P 		92.8
(-1.4)
P 		95.9
(-1.2)
P 		57.1
(-3)
P 		132
B 170.5
(3)
P 		98.1
(-1.5)
P 		82.6
(-2.5)
P 		75
(-3)
P 		96
C 142.9
(3)
P 		90.9
(-1)
P 		143.1
(3)
P 		64.9
(-3)
P 		78
avr 167.4
(3) 		93.9
(-1.3) 		107.2
(-0.6) 		65.7
(-3) 		102

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 185
1 2 3 4 5 6 range
A 103.3
(-1.8)
P 		251.2
(3)
P 		101.5
(-1.9)
P 		104.2
(-1.8)
P 		146.4
(-0.4)
P 		66.6
(-3)
P 		185
B 181.1
(1)
P 		218.2
(3)
P 		142.8
(-1)
P 		137.8
(-1.2)
P 		183
(1.1)
P 		104.3
(-3)
P 		114
C 161.1
(1.1)
P 		194.4
(3)
P 		137.9
(-0.3)
P 		113.4
(-1.7)
P 		98.3
(-2.6)
P 		91.2
(-3)
P 		103
avr 148.5
(-0.3) 		221.3
(3) 		127.4
(-1.2) 		118.5
(-1.6) 		142.6
(-0.5) 		87.4
(-3) 		134
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 190689_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16254
Sequence Type Exemplar sequence
Representative Public ID C54D1.6 NCBI
Target Description C54D1.6 /REP_DB=WormBase Gene ID /WP=CE08973 /GEN=bar-1 /TR=Q18825 /GB=AAC48154.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=beta-catenin
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076805(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076805 NCBI Caenorhabditis elegans C54D1.6 (beta-catenin) mRNA, complete cds. 11/11 None
C54D1.6 ENSEMBL cdna:known chromosome:CEL140:X:7165951:7170576:-1 gene:C54D1.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:7166098-7170563(-) 99.71 100.0
Public Domain and Genome References
Gene Title beta-catenin
Gene Symbol bar-1
Ensembl C54D1.6
Entrez Gene 180982 Entrez gene
SwissProt Q18825 EMBL-EBI
WormBase CE08973 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
45944 positive regulation of transcription from RNA polymerase II promoter inferred from direct assay QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from direct assay QuickGO AmiGO
5737 cytoplasm inferred from direct assay QuickGO AmiGO
5913 cell-cell adherens junction inferred from direct assay QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3713 transcription coactivator activity inferred from direct assay QuickGO AmiGO
8134 transcription factor binding inferred from physical interaction QuickGO AmiGO
5515 protein binding inferred from physical interaction QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC48154 Beta-catenin/armadillo related protein 1 [Caenorhabditis elegans] ref|NP_509206.1| C54D1.6 [Caenorhabditis elegans] gb|AAC17424.1| beta-catenin/armadillo homolog BAR-1 [Caenorhabditis elegans] 0.0
blast CAE65851 Hypothetical protein CBG10985 [Caenorhabditis briggsae] 0.0
blast AAX47336 beta-catenin [Pristionchus pacificus] 4.0E-95
Sequence
Target Sequence 
>C. ELEGANS:190689_S_AT
aatcatcggctctggccttgatttataatttgatgcatcatgagcaaatggcaaacgtac
ttgacagagatgacgttcttgttaaaatgcttcaaaatgttcaaatgcaatctcaaactc
accctgaattagcaagtctagcaaataatattctcaagatgatgtatgagaagcgagaaa
agacaaggaatactcttccaagatacaattcatatttagagagccaatttggtcacatga
gcatgaccaccccacgaagcgaagcactaaatagtagcggtgaagtgtgtgagggagctg
gagagcaatggtctacacctttaacagatgatactatgatggattcgtattgcaacagct
ccggacgagattcatcaaaaccatacaactcaccaatgtaccattccccaccagcaatgt
atccagaatactcaattggacctcccgagacgtacttggatccccatgccacagcatctt
gttatccgcgaccaacgcctcctcaatataacagctatgaccgtagtccaccagtttaca
acgaccttccatcaaaccctggtccgagtagtcattc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATCATCGGCTCTGGCCTTGATTTA 48 171 1835 Antisense
GCTGGAGAGCAATGGTCTACACCTT 434 295 2131 Antisense
GATTCGTATTGCAACAGCTCCGGAC 48 431 2176 Antisense
TACAACTCACCAATGTACCATTCCC 684 641 2218 Antisense
TTCCCCACCAGCAATGTATCCAGAA 612 697 2238 Antisense
AATACTCAATTGGACCTCCCGAGAC 141 173 2261 Antisense
CCCCATGCCACAGCATCTTGTTATC 308 261 2296 Antisense
CAACGCCTCCTCAATATAACAGCTA 409 187 2327 Antisense
TAACAGCTATGACCGTAGTCCACCA 476 637 2343 Antisense
TAGTCCACCAGTTTACAACGACCTT 62 651 2358 Antisense
CAAACCCTGGTCCGAGTAGTCATTC 324 191 2387 Antisense
Sequence Source Affymetrix Proprietary Database