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[190688_s_at] --- /// nitrophenylphosphatase /// nitrophenylphosphatase

Description K09H11.7 /REP_DB=WormBase Gene ID /WP=CE12060 /TR=O01591 /GB=AAB52266.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=nitrophenylphosphatase
Cluster 6grp_highest_10_10 > 39      6grp_high1_10_10 > 92      4grp_highest_8_8 > 14      4grp_high_8_8 > 15      6grp_highest_nonorm > 49      6grp_total > 83      4grp_total > 08      6grp_highest_sub > 04      6grp_high1_sub > 04_05      6grp_total_sub > Hat      6grp_rule_based > S4      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9268
1 2 3 4 range
A 266.2
(-3)
P 		1124.5
(-2.4)
P 		2216.9
(-1.7)
P 		9533.7
(3)
P 		9268
B 329
(-3)
P 		1046.1
(-2.4)
P 		2373.4
(-1.3)
P 		7528.9
(3)
P 		7200
C 436.7
(-3)
P 		1077.5
(-2.5)
P 		2549
(-1.3)
P 		7920.3
(3)
P 		7484
avr 344
(-3) 		1082.7
(-2.4) 		2379.8
(-1.5) 		8327.6
(3) 		7984

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7544
1 2 3 4 5 6 range
A 1723.2
(-3)
P 		3583.3
(-0.7)
P 		5098.4
(1.1)
P 		6632.4
(3)
P 		6495.2
(2.8)
P 		4403.1
(0.3)
P 		4909
B 1809.9
(-3)
P 		3504.4
(-1)
P 		3994.5
(-0.5)
P 		6554.7
(2.5)
P 		6993.3
(3)
P 		5472.5
(1.2)
P 		5183
C 1393.1
(-3)
P 		3520.4
(-1.3)
P 		3965.4
(-1)
P 		8937.2
(3)
P 		6707.5
(1.2)
P 		5497.3
(0.3)
P 		7544
avr 1642.1
(-3) 		3536
(-1) 		4352.8
(-0.2) 		7374.8
(3) 		6732
(2.3) 		5124.3
(0.6) 		5733
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1508
1 2 3 4 range
A 96.9
(-3)
P 		244.1
(-2.3)
P 		579.5
(-0.8)
P 		1395.5
(3)
P 		1299
B 104.9
(-3)
P 		258.4
(-2.4)
P 		550
(-1.2)
P 		1604.4
(3)
P 		1500
C 144.6
(-3)
P 		309.8
(-2.2)
P 		888.4
(0.7)
P 		1335.5
(3)
P 		1191
avr 115.5
(-3) 		270.8
(-2.3) 		672.6
(-0.5) 		1445.1
(3) 		1330

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2524
1 2 3 4 5 6 range
A 317.7
(-3)
P 		1274.4
(0.5)
P 		1110.3
(-0.1)
P 		1682.1
(2)
P 		1960
(3)
P 		1072
(-0.2)
P 		1642
B 629.8
(-3)
P 		1166.5
(-1.5)
P 		970
(-2.1)
P 		1736.1
(0)
P 		2841.3
(3)
P 		2040.7
(0.8)
P 		2212
C 516.4
(-3)
P 		1074.2
(-1)
P 		1009.3
(-1.2)
P 		1797.3
(1.6)
P 		2170.4
(3)
P 		1840.3
(1.8)
P 		1654
avr 488
(-3) 		1171.7
(-0.8) 		1029.9
(-1.2) 		1738.5
(1.1) 		2323.9
(3) 		1651
(0.8) 		1836
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 190688_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12073
Sequence Type Exemplar sequence
Representative Public ID K09H11.7 NCBI
Target Description K09H11.7 /REP_DB=WormBase Gene ID /WP=CE12060 /TR=O01591 /GB=AAB52266.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=nitrophenylphosphatase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072108(11), NM_072110(11), NM_072111(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072108 NCBI Caenorhabditis elegans K09H11.7 (nitrophenylphosphatase) mRNA, complete cds. 11/11 None
NM_072110 NCBI Caenorhabditis elegans C53A3.2 (C53A3.2) mRNA, complete cds. 11/11 None
NM_072111 NCBI Caenorhabditis elegans F44E7.2 (nitrophenylphosphatase) mRNA, complete cds. 11/11 None
SNAP00000006986 ENSEMBL cdna:SNAP chromosome:CEL140:V:5773053:5774161:1 11/11 None
GENEFINDER00000007000 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:5773053:5774161:1 11/11 None
SNAP00000008374 ENSEMBL cdna:SNAP chromosome:CEL140:V:5751029:5756127:-1 11/11 None
GENEFINDER00000008378 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:5755058:5756127:-1 11/11 None
SNAP00000031234 ENSEMBL cdna:SNAP chromosome:CEL140:V:5765237:5766387:-1 11/11 None
GENEFINDER00000031236 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:5765237:5766387:-1 11/11 None
K09H11.7 ENSEMBL cdna:known chromosome:CEL140:V:5755058:5756127:-1 gene:K09H11.7 11/11 None
C53A3.2 ENSEMBL cdna:known chromosome:CEL140:V:5765143:5766440:-1 gene:C53A3.2 11/11 None
F44E7.2 ENSEMBL cdna:known chromosome:CEL140:V:5773049:5774361:1 gene:F44E7.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:5773113-5774148(+) 95.98 95.98
chrV:5755057-5756127(-) 100.0 100.0
chrV:5765237-5766237(-) 91.64 91.64
Public Domain and Genome References
Gene Title
nitrophenylphosphatase
nitrophenylphosphatase
Ensembl K09H11.7
C53A3.2
F44E7.2
Entrez Gene 178963 Entrez gene
178964 Entrez gene
178965 Entrez gene
SwissProt O44538 EMBL-EBI
O16247 EMBL-EBI
O01591 EMBL-EBI
WormBase CE16942 Wormbase
CE17072 Wormbase
CE12060 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:249658_S_AT phosphoglycolate phosphatase, putative at
ATH1-121501:249658_S_AT phosphoglycolate phosphatase, putative at
CANINE_2:CFA.17766.1.S1_S_AT similar to pyridoxal (pyridoxine, vitamin B6) phosphatase cfa
CANINE_2:CFA.20689.1.S1_S_AT similar to pyridoxal (pyridoxine, vitamin B6) phosphatase cfa
CANINE_2:CFAAFFX.29656.1.S1_AT similar to pyridoxal (pyridoxine, vitamin B6) phosphatase cfa
CANINE_2:CFA.17766.1.S1_S_AT similar to pyridoxal (pyridoxine, vitamin B6) phosphatase cfa
CANINE_2:CFA.20689.1.S1_S_AT similar to pyridoxal (pyridoxine, vitamin B6) phosphatase cfa
CANINE_2:CFAAFFX.29656.1.S1_AT similar to pyridoxal (pyridoxine, vitamin B6) phosphatase cfa
DROSOPHILA_2:1637298_AT dm
DROSGENOME1:152081_AT dm
DROSOPHILA_2:1637298_AT dm
DROSGENOME1:152081_AT dm
CHICKEN:GGA.5625.1.S1_S_AT similar to RIKEN cDNA 1700012G19 gga
CHICKEN:GGAAFFX.3680.1.S1_AT similar to RIKEN cDNA 1700012G19 gga
CHICKEN:GGA.5625.1.S1_S_AT similar to RIKEN cDNA 1700012G19 gga
CHICKEN:GGAAFFX.3680.1.S1_AT similar to RIKEN cDNA 1700012G19 gga
U133_X3P:HS.13561.0.S1_3P_AT hypothetical protein LOC283871 hs
HG-U133_PLUS_2:222622_AT hypothetical protein LOC283871 hs
HG-U133B:222622_AT hypothetical protein LOC283871 hs
HG-U95E:78442_AT hypothetical protein LOC283871 hs
U133_X3P:HS.13561.0.S1_3P_AT hypothetical protein LOC283871 hs
HG-U133_PLUS_2:222622_AT hypothetical protein LOC283871 hs
HG-U133B:222622_AT hypothetical protein LOC283871 hs
HG-U95E:78442_AT hypothetical protein LOC283871 hs
MU11KSUBA:AA003157_AT RIKEN cDNA 1700012G19 gene mm
MG-U74AV2:98890_AT RIKEN cDNA 1700012G19 gene mm
MG-U74BV2:115879_AT RIKEN cDNA 1700012G19 gene mm
MOE430A:1428788_AT RIKEN cDNA 1700012G19 gene mm
MOUSE430A_2:1428788_AT RIKEN cDNA 1700012G19 gene mm
MOUSE430_2:1428788_AT RIKEN cDNA 1700012G19 gene mm
MOE430A:1452919_A_AT RIKEN cDNA 1700012G19 gene mm
MOUSE430A_2:1452919_A_AT RIKEN cDNA 1700012G19 gene mm
MOUSE430_2:1452919_A_AT RIKEN cDNA 1700012G19 gene mm
MU19KSUBA:TC19364_AT RIKEN cDNA 1700012G19 gene, mRNA (cDNA clone MGC:103027 IMAGE:5356187) mm
MU19KSUBA:TC19365_S_AT RIKEN cDNA 1700012G19 gene, mRNA (cDNA clone MGC:103027 IMAGE:5356187) mm
MU19KSUBB:TC26742_AT RIKEN cDNA 1700012G19 gene, mRNA (cDNA clone MGC:103027 IMAGE:5356187) mm
MU11KSUBA:AA003157_AT RIKEN cDNA 1700012G19 gene mm
MG-U74AV2:98890_AT RIKEN cDNA 1700012G19 gene mm
MG-U74BV2:115879_AT RIKEN cDNA 1700012G19 gene mm
MOE430A:1428788_AT RIKEN cDNA 1700012G19 gene mm
MOUSE430A_2:1428788_AT RIKEN cDNA 1700012G19 gene mm
MOUSE430_2:1428788_AT RIKEN cDNA 1700012G19 gene mm
MOE430A:1452919_A_AT RIKEN cDNA 1700012G19 gene mm
MOUSE430A_2:1452919_A_AT RIKEN cDNA 1700012G19 gene mm
MOUSE430_2:1452919_A_AT RIKEN cDNA 1700012G19 gene mm
MU19KSUBA:TC19364_AT RIKEN cDNA 1700012G19 gene, mRNA (cDNA clone MGC:103027 IMAGE:5356187) mm
MU19KSUBA:TC19365_S_AT RIKEN cDNA 1700012G19 gene, mRNA (cDNA clone MGC:103027 IMAGE:5356187) mm
MU19KSUBB:TC26742_AT RIKEN cDNA 1700012G19 gene, mRNA (cDNA clone MGC:103027 IMAGE:5356187) mm
RG-U34B:RC_AI014076_AT similar to RIKEN cDNA 1700012G19 gene (predicted) rn
RAE230A:1375368_AT similar to RIKEN cDNA 1700012G19 gene (predicted) rn
RAT230_2:1375368_AT similar to RIKEN cDNA 1700012G19 gene (predicted) rn
RAE230A:1388881_AT Similar to RIKEN cDNA 1700012G19 gene (predicted) rn
RAT230_2:1388881_AT Similar to RIKEN cDNA 1700012G19 gene (predicted) rn
RG-U34B:RC_AA900590_AT Similar to RIKEN cDNA 1700012G19 gene (predicted) rn
RG-U34B:RC_AI014076_AT similar to RIKEN cDNA 1700012G19 gene (predicted) rn
RAE230A:1375368_AT similar to RIKEN cDNA 1700012G19 gene (predicted) rn
RAT230_2:1375368_AT similar to RIKEN cDNA 1700012G19 gene (predicted) rn
RAE230A:1388881_AT Similar to RIKEN cDNA 1700012G19 gene (predicted) rn
RAT230_2:1388881_AT Similar to RIKEN cDNA 1700012G19 gene (predicted) rn
RG-U34B:RC_AA900590_AT Similar to RIKEN cDNA 1700012G19 gene (predicted) rn
YEAST_2:1769961_AT Alkaline phosphatase specific for p-nitrophenyl phosphate, involved in dephosphorylation of histone II-A and casein Sc
YEAST_2:1769961_AT Alkaline phosphatase specific for p-nitrophenyl phosphate, involved in dephosphorylation of histone II-A and casein Sc
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
8152 metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3824 catalytic activity inferred from electronic annotation QuickGO AmiGO
8967 phosphoglycolate phosphatase activity inferred from electronic annotation QuickGO AmiGO
16787 hydrolase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_504509 K09H11.7 [Caenorhabditis elegans] gb|AAB52266.1| Hypothetical protein K09H11.7 [Caenorhabditis elegans] 0.0
blast AAC25793 Hypothetical protein F44E7.2 [Caenorhabditis elegans] ref|NP_504512.1| F44E7.2 [Caenorhabditis elegans] 0.0
blast NP_504511 C53A3.2 [Caenorhabditis elegans] gb|AAB94163.1| Hypothetical protein C53A3.2 [Caenorhabditis elegans] 0.0
blast CAE64573 Hypothetical protein CBG09325 [Caenorhabditis briggsae] 0.0
blast CAE64572 Hypothetical protein CBG09323 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR005834 EMBL-EBI Haloacid dehalogenase-like hydrolase 1.3E-24
Pfam IPR005834 EMBL-EBI Haloacid dehalogenase-like hydrolase 1.3E-24
Pfam IPR005834 EMBL-EBI Haloacid dehalogenase-like hydrolase 8.8E-25
Sequence
Target Sequence 
>C. ELEGANS:190688_S_AT
tgaagccgacggatctggtgcattcatgtatgatattaaattggaagaaaatgttggagc
agtcgttgttggatacgaaaaacatttcgattatgtcaaaatgatgaaggcttcaaatta
tttaagagaagaaggtgttctgtttgttgcaacaaatgaagatgaaacatgtccaggacc
aaatccagaagttgttattcctgatgctggaccaattgttgcagcaatcaaatgtgcatc
tggaagagatccattgactgttggaaaaccatgtactccagcatttaattatattaaaag
aaaatggaatatcaatccatcaagaacaatgatgattggagacagaaccaacacagatgt
caaattcggaagagatcacggaatgaagactttgttagttttatctggatgtcatcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGAAGCCGACGGATCTGGTGCATTC 230 575 453 Antisense
GACGGATCTGGTGCATTCATGTATG 281 377 460 Antisense
TGTTGGAGCAGTCGTTGTTGGATAC 591 563 504 Antisense
GAAGGTGTTCTGTTTGTTGCAACAA 335 335 583 Antisense
ACATGTCCAGGACCAAATCCAGAAG 269 107 619 Antisense
AATCCAGAAGTTGTTATTCCTGATG 430 165 634 Antisense
TATTCCTGATGCTGGACCAATTGTT 49 665 648 Antisense
GCAGCAATCAAATGTGCATCTGGAA 61 313 673 Antisense
GGAAGAGATCCATTGACTGTTGGAA 469 531 694 Antisense
GAAAACCATGTACTCCAGCATTTAA 292 355 716 Antisense
GTTAGTTTTATCTGGATGTCATCAA 175 447 846 Antisense
Sequence Source Affymetrix Proprietary Database