[Home] | [Total List]

[190684_at] discs large like repeats

Description T21C9.1 /REP_DB=WormBase Gene ID /WP=CE23996 /TR=Q22638 /GB=CAA97330.2 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=discs large like repeats
Cluster 6grp_highest_10_10 > 12      6grp_high1_10_10 > 01      4grp_highest_8_8 > 58      4grp_high_8_8 > 33      6grp_highest_nonorm > 73      6grp_total > 08      4grp_total > 46      6grp_high1_sub > De      6grp_total_sub > Decrease      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 365
1 2 3 4 range
A 697
(3)
P 		501.8
(-1.3)
P 		448
(-2.4)
P 		422.4
(-3)
P 		275
B 775.3
(3)
P 		468.4
(-2)
P 		471.1
(-2)
P 		410.6
(-3)
P 		365
C 704.3
(3)
P 		562.8
(-0.8)
P 		479.4
(-3)
P 		568.1
(-0.6)
P 		225
avr 725.5
(3) 		511
(-2) 		466.2
(-3) 		467
(-3) 		259

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 258
1 2 3 4 5 6 range
A 644
(3)
P 		557.1
(-1)
P 		632.3
(2.5)
P 		547.3
(-1.4)
P 		512.1
(-3)
P 		541.7
(-1.7)
P 		132
B 646.4
(2.5)
P 		490.4
(-2)
P 		662.1
(3)
P 		456.9
(-3)
P 		577.7
(0.5)
P 		546.2
(-0.4)
P 		205
C 606.2
(0.2)
P 		552.1
(-1.2)
P 		541.2
(-1.5)
P 		714.7
(3)
P 		482.2
(-3)
P 		505.1
(-2.4)
P 		233
avr 632.2
(3) 		533.2
(-2.5) 		611.9
(1.9) 		573
(-0.3) 		524
(-3) 		531
(-2.6) 		108
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 192
1 2 3 4 range
A 253.8
(3)
P 		108.9
(-1.5)
P 		117.1
(-1.3)
P 		61.8
(-3)
P 		192
B 247.2
(3)
P 		115.7
(-1.9)
P 		109.2
(-2.2)
P 		87.5
(-3)
P 		160
C 233.1
(3)
P 		161.8
(-0.1)
P 		167.1
(0.1)
P 		95.8
(-3)
P 		137
avr 244.7
(3) 		128.8
(-1.3) 		131.1
(-1.2) 		81.7
(-3) 		163

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 116
1 2 3 4 5 6 range
A 118.7
(-3)
P 		198.1
(3)
P 		137.7
(-1.6)
P 		138.8
(-1.5)
P 		154.5
(-0.3)
P 		131.9
(-2)
P 		79
B 224.9
(2.5)
P 		163.2
(-0.8)
P 		160.8
(-0.9)
P 		121
(-3)
P 		234.7
(3)
P 		203.7
(1.4)
P 		114
C 224.7
(3)
P 		168.5
(-0.9)
P 		137.8
(-3)
P 		143.7
(-2.6)
P 		156
(-1.7)
P 		169.1
(-0.8)
P 		87
avr 189.4
(3) 		176.6
(1.6) 		145.4
(-1.8) 		134.5
(-3) 		181.7
(2.2) 		168.2
(0.7) 		55
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190684_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12316
Sequence Type Exemplar sequence
Representative Public ID T21C9.1 NCBI
Target Description T21C9.1 /REP_DB=WormBase Gene ID /WP=CE23996 /TR=Q22638 /GB=CAA97330.2 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=discs large like repeats
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073311(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073311 NCBI Caenorhabditis elegans T21C9.1 (T21C9.1) mRNA, complete cds. 11/11 None
SNAP00000011983 ENSEMBL cdna:SNAP chromosome:CEL140:V:10579545:10580903:-1 11/11 None
GENEFINDER00000011999 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:10579545:10580903:-1 11/11 None
T21C9.1 ENSEMBL cdna:known chromosome:CEL140:V:10579094:10580903:-1 gene:T21C9.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:10579544-10580903(-) 100.0 100.0
Public Domain and Genome References
Gene Title discs large like repeats
Ensembl T21C9.1
Entrez Gene 179475 Entrez gene
SwissProt Q22638 EMBL-EBI
WormBase CE23996 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5515 protein binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA97330 Hypothetical protein T21C9.1 [Caenorhabditis elegans] ref|NP_505712.1| T21C9.1 [Caenorhabditis elegans] 1.0E-143
blast CAA97330 Hypothetical protein T21C9.1 [Caenorhabditis elegans] ref|NP_505712.1| T21C9.1 [Caenorhabditis elegans] 1.0E-139
blast CAA97330 Hypothetical protein T21C9.1 [Caenorhabditis elegans] ref|NP_505712.1| T21C9.1 [Caenorhabditis elegans] 1.0E-132
blast CAE64849 Hypothetical protein CBG09645 [Caenorhabditis briggsae] 1.0E-131
blast CAE64849 Hypothetical protein CBG09645 [Caenorhabditis briggsae] 1.0E-124
blast CAE64849 Hypothetical protein CBG09645 [Caenorhabditis briggsae] 1.0E-114
blast BAA76285.1 CsENDO-3 [Ciona savignyi] 9.0E-9
Protein Domains
Database ID Description E-Value
Pfam IPR001478 EMBL-EBI PDZ/DHR/GLGF domain 6.1E-10
Pfam IPR001478 EMBL-EBI PDZ/DHR/GLGF domain 6.1E-10
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505712.1 1 240-262
T21C9.1 1 240-262
SNAP00000011983 1 255-277
GENEFINDER00000011999 1 264-286
Sequence
Target Sequence 
>C. ELEGANS:190684_AT
ggtggaacagacaatcctcactttgttggagatatcggaatatacgtctcatcagttaat
agcgagtcaaaatcatatggagtcgtaagaacaggcgataaaattttgtcgtttgacggt
atcgatatgacctacaagacacacgatgaagctgtggaagtatttcgaagtgttaaaatc
ggtcatgtggctaaaatgttgattgatcgagaatacttacatcttcaagaagatcgaaca
caaactccaactgcttctgtttcaattactcctcaagtcactccacagactcgtagtact
cagaataatacagacacaccaaagtcgatgtcgcattcggaatcaaaaagccgtttgacg
tctcatggactttcggctgttatagaaagaattcgtggaaaagtttacgaagaagaagat
gctcaaagtgttacttcctatgctccttccactcattccatcattgacgatgtaccgaga
acaccacgtaaaccacttagtcttttggatccgagaaacaattcttggctaaccgaagct
ttgtatgtttcaatcggtcttggagcattgactatctctg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGTGGAACAGACAATCCTCACTTTG 225 499 205 Antisense
ACAAACTCCAACTGCTTCTGTTTCA 482 111 444 Antisense
TTCAATTACTCCTCAAGTCACTCCA 73 685 465 Antisense
CACTCCACAGACTCGTAGTACTCAG 501 197 483 Antisense
AAAGCCGTTTGACGTCTCATGGACT 267 125 551 Antisense
CTCATGGACTTTCGGCTGTTATAGA 500 229 566 Antisense
CAAAGTGTTACTTCCTATGCTCCTT 247 193 628 Antisense
TTCCACTCATTCCATCATTGACGAT 571 699 651 Antisense
GACGATGTACCGAGAACACCACGTA 487 377 670 Antisense
GAACACCACGTAAACCACTTAGTCT 560 349 683 Antisense
GGTCTTGGAGCATTGACTATCTCTG 586 503 760 Antisense
Sequence Source Affymetrix Proprietary Database