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[190682_at]

Description F10D2.2 /REP_DB=WormBase Gene ID /WP=CE09313 /TR=O16920 /GB=AAC48233.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=glucuronosyltransferase
Cluster 6grp_highest_10_10 > 16      6grp_high1_10_10 > 50      4grp_highest_8_8 > 56      4grp_high_8_8 > 35      6grp_highest_nonorm > 71      6grp_total > 60      4grp_total > 44      6grp_highest_sub > 03_04      6grp_high1_sub > 03_04      6grp_total_sub > Hat      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 469
1 2 3 4 range
A 504.4
(3)
P 		465.8
(2.3)
P 		398.4
(1.1)
P 		174.5
(-3)
P 		330
B 446.9
(0.3)
P 		643.3
(3)
P 		199.3
(-3)
P 		295.6
(-1.7)
P 		444
C 534.4
(1.8)
P 		587.4
(3)
P 		437.1
(-0.5)
P 		332.9
(-3)
P 		255
avr 495.2
(1.6) 		565.5
(3) 		344.9
(-1.4) 		267.7
(-3) 		298

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 285
1 2 3 4 5 6 range
A 313.5
(-0.7)
P 		253.8
(-2)
P 		487
(3)
P 		436.1
(1.9)
P 		270.3
(-1.6)
P 		207
(-3)
P 		280
B 395.3
(3)
P 		237.9
(-2.8)
P 		283.1
(-1.1)
P 		302.5
(-0.4)
P 		232.8
(-3)
P 		334.9
(0.8)
P 		163
C 282.6
(-0.8)
P 		277.9
(-1)
P 		364.8
(1.4)
P 		426
(3)
P 		202.4
(-3)
P 		258.5
(-1.5)
P 		224
avr 330.5
(0.7) 		256.5
(-2.2) 		378.3
(2.6) 		388.2
(3) 		235.2
(-3) 		266.8
(-1.8) 		153
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 158
1 2 3 4 range
A 183.6
(3)
P 		101.1
(-0.1)
P 		104.1
(-0)
P 		25.5
(-3)
P 		158
B 142.5
(2.1)
P 		158.9
(3)
P 		46.2
(-3)
P 		63
(-2.1)
P 		113
C 176.9
(3)
P 		168.9
(2.6)
P 		152.3
(1.8)
P 		56.1
(-3)
P 		121
avr 167.7
(3) 		143
(1.8) 		100.9
(-0.4) 		48.2
(-3) 		120

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 87
1 2 3 4 5 6 range
A 57.8
(-2.3)
P 		90.3
(1)
P 		106.1
(2.6)
P 		110.6
(3)
P 		81.6
(0.1)
P 		50.4
(-3)
P 		60
B 137.5
(3)
P 		79.2
(-2.1)
P 		68.7
(-3)
P 		80.1
(-2)
P 		94.6
(-0.7)
P 		124.9
(1.9)
P 		69
C 104.7
(3)
P 		84.8
(-0)
P 		92.9
(1.2)
P 		85.7
(0.1)
P 		65.5
(-3)
P 		86.6
(0.2)
P 		39
avr 100
(3) 		84.8
(-1.7) 		89.2
(-0.3) 		92.1
(0.6) 		80.6
(-3) 		87.3
(-0.9) 		19
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190682_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12285
Sequence Type Exemplar sequence
Representative Public ID F10D2.2 NCBI
Target Description F10D2.2 /REP_DB=WormBase Gene ID /WP=CE09313 /TR=O16920 /GB=AAC48233.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=glucuronosyltransferase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072415(11), NM_182344(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072415 NCBI Caenorhabditis elegans F10D2.2a (glucuronosyltransferase) mRNA, complete cds. 11/11 None
NM_182344 NCBI Caenorhabditis elegans F10D2.2b (glucuronosyltransferase) mRNA, complete cds. 11/11 None
SNAP00000033812 ENSEMBL cdna:SNAP chromosome:CEL140:V:7159887:7161712:1 11/11 None
GENEFINDER00000033824 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:7158815:7161712:1 11/11 None
F10D2.2a ENSEMBL cdna:known chromosome:CEL140:V:7159733:7161770:1 gene:F10D2.2 11/11 None
F10D2.2b ENSEMBL cdna:known chromosome:CEL140:V:7159869:7161712:1 gene:F10D2.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7159733-7161713(+) 98.8 100.0
Public Domain and Genome References
Ensembl F10D2.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_504816 F10D2.2a [Caenorhabditis elegans] gb|AAC48233.2| Hypothetical protein F10D2.2a [Caenorhabditis elegans] 0.0
blast NP_504812 F10D2.7 [Caenorhabditis elegans] gb|AAC48237.1| Hypothetical protein F10D2.7 [Caenorhabditis elegans] 0.0
blast CAE72010 Hypothetical protein CBG19091 [Caenorhabditis briggsae] 0.0
blast NP_872144 F10D2.2b [Caenorhabditis elegans] gb|AAN84825.1| Hypothetical protein F10D2.2b [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 3.7E-18
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 5.9E-16
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 3.7E-18
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 3.7E-18
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 3.7E-18
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504816.2 2 5-27,483-505
NP_872144.1 1 330-352
F10D2.2a 2 60-82,540-562
F10D2.2b 1 330-352
SNAP00000033812 1 465-487
GENEFINDER00000033824 3 67-89,101-123,581-603
Sequence
Target Sequence 
>C. ELEGANS:190682_AT
aagctacttgggaaaacctgccattttgtgtccacaactgttcgaccaaatgagaaatgc
aaaaatgctggtccgtcacaatggatcaattgagttatcgaaatatgatctaggagattc
tgaaaaaattgtcaacgcttttcaagcaatcttatttgattcttcgtatgcaaaaaatgc
tctaaaattagcagaacagctcgagaatcagccaattaaacccaaagaaatgatggtgaa
acatgcagaatttgcagcaagatttggtcgcttaccatcactggatccatactcgagaaa
aatgacgtttattgaatatttccttattgatgttgcagctattagtatggttgtgttgat
agctgtagttttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGCTACTTGGGAAAACCTGCCATT 156 141 1320 Antisense
ACCTGCCATTTTGTGTCCACAACTG 74 89 1335 Antisense
TGTGTCCACAACTGTTCGACCAAAT 415 551 1346 Antisense
TTGTCAACGCTTTTCAAGCAATCTT 126 709 1448 Antisense
AAGCAATCTTATTTGATTCTTCGTA 486 151 1463 Antisense
TGCAGCAAGATTTGGTCGCTTACCA 455 577 1572 Antisense
ATTTGGTCGCTTACCATCACTGGAT 99 19 1581 Antisense
TGACGTTTATTGAATATTTCCTTAT 31 571 1622 Antisense
ATTTCCTTATTGATGTTGCAGCTAT 593 17 1637 Antisense
TGCAGCTATTAGTATGGTTGTGTTG 557 477 1653 Antisense
GGTTGTGTTGATAGCTGTAGTTTTT 528 507 1668 Antisense
Sequence Source Affymetrix Proprietary Database