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[190681_at] glucuronosyltransferase

Description K08B4.4 /REP_DB=WormBase Gene ID /WP=CE18033 /TR=Q9TYY4 /GB=AAC68980.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=glucuronosyltransferase
Cluster 6grp_highest_10_10 > 76      6grp_high1_10_10 > 77      4grp_high_8_8 > 06      6grp_highest_nonorm > 92      6grp_total > 67      4grp_total > 03      6grp_highest_sub > Da      6grp_cgc > 48      6grp_high1_sub > Da      6grp_cgc_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 701
1 2 3 4 range
A 149.8
(-2.2)
P 		120.1
(-2.5)
M 		78.7
(-3)
P 		592
(3)
P 		513
B 123.8
(-2.4)
P 		125.9
(-2.4)
P 		59.3
(-3)
A 		736.7
(3)
P 		677
C 158.7
(-2.8)
P 		132.6
(-3)
A 		134.7
(-3)
P 		760
(3)
P 		627
avr 144.1
(-2.5) 		126.2
(-2.7) 		90.9
(-3) 		696.2
(3) 		605

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 547
1 2 3 4 5 6 range
A 187.3
(-2.7)
P 		181.8
(-2.8)
P 		192.2
(-2.7)
P 		163.8
(-3)
P 		215.2
(-2.4)
P 		710
(3)
P 		546
B 225
(-2.3)
P 		187.2
(-2.7)
P 		162.8
(-3)
P 		187.2
(-2.7)
P 		238.4
(-2.1)
P 		682.1
(3)
P 		519
C 220.1
(-3)
P 		223.3
(-3)
P 		227.1
(-2.9)
P 		219.7
(-3)
P 		224.4
(-2.9)
P 		707.9
(3)
P 		488
avr 210.8
(-2.8) 		197.4
(-2.9) 		194
(-3) 		190.2
(-3) 		226
(-2.6) 		700
(3) 		510
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 143
1 2 3 4 range
A 54.6
(0.1)
P 		26.1
(-2.5)
M 		20.6
(-3)
P 		86.7
(3)
P 		66
B 39.5
(-1.9)
P 		31.1
(-2.3)
P 		13.7
(-3)
A 		157
(3)
P 		143
C 52.5
(-2)
P 		38.1
(-3)
A 		47
(-2.4)
P 		128.1
(3)
P 		90
avr 48.9
(-1.6) 		31.8
(-2.7) 		27.1
(-3) 		123.9
(3) 		97

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 220
1 2 3 4 5 6 range
A 34.5
(-3)
P 		64.7
(-1.7)
P 		41.9
(-2.7)
P 		41.5
(-2.7)
P 		64.9
(-1.7)
P 		172.9
(3)
P 		138
B 78.3
(-1.9)
P 		62.3
(-2.4)
P 		39.5
(-3)
P 		49.6
(-2.7)
P 		96.9
(-1.4)
P 		254.3
(3)
P 		215
C 81.6
(-1.8)
P 		68.1
(-2.3)
P 		57.8
(-2.6)
P 		44.2
(-3)
P 		72.6
(-2.1)
P 		237
(3)
P 		193
avr 64.8
(-2.3) 		65
(-2.3) 		46.4
(-3) 		45.1
(-3) 		78.1
(-1.9) 		221.4
(3) 		176
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190681_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11154
Sequence Type Exemplar sequence
Representative Public ID K08B4.4 NCBI
Target Description K08B4.4 /REP_DB=WormBase Gene ID /WP=CE18033 /TR=Q9TYY4 /GB=AAC68980.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=glucuronosyltransferase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068512(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068512 NCBI Caenorhabditis elegans K08B4.4 (glucuronosyltransferase) mRNA, complete cds. 11/11 None
GENEFINDER00000004916 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:6076754:6083575:-1 11/11 None
K08B4.4 ENSEMBL cdna:known chromosome:CEL140:IV:6080952:6083575:-1 gene:K08B4.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000004904 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:6080957-6083581(-) 100.0 100.0
Public Domain and Genome References
Gene Title glucuronosyltransferase
Gene Symbol ugt-20
Ensembl K08B4.4
Entrez Gene 187130 Entrez gene
SwissProt Q9TYY4 EMBL-EBI
WormBase CE18033 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
8152 metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
16758 transferase activity, transferring hexosyl groups inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC68980 Udp-glucuronosyltransferase protein 20 [Caenorhabditis elegans] ref|NP_500913.1| K08B4.4 [Caenorhabditis elegans] 0.0
blast AAC68981 Udp-glucuronosyltransferase protein 19 [Caenorhabditis elegans] ref|NP_500912.2| K08B4.3 [Caenorhabditis elegans] 0.0
blast CAE61607 Hypothetical protein CBG05526 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 8.9E-14
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 7.8E-21
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 3.2E-18
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 3.2E-28
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_500913.1 1 487-509
K08B4.4 1 487-509
GENEFINDER00000004916 3 481-503,510-532,1056-1078
Sequence
Target Sequence 
>C. ELEGANS:190681_AT
gtctatcttggagattggcttccacaaaatgaacttcttgctgataaaagattaaatgtt
tttgtaactcatggaggtcttggctcagttactgaactttccatgatgggtactcctgct
gttatgattcctctctttgctgatcaatccagaaatgctcaaatgctcaagcgtcatgga
ggagcagctgttctcgtgaaaaacgatctatctaaccctaaactcgtgcaagaaacaatt
gaaaaagtaattaataattcggagtacagaaagaatgctgagaggctatccgaaatgctc
aataatctgccgacaaatcccagagagacacttgtaaaatacgtggaatttgcagcaaga
tttggaaaactgccgtctctagataattatggaagacaacaatcattcgttgagtacttc
tttttggacattatcgca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCTATCTTGGAGATTGGCTTCCAC 566 469 1051 Antisense
TTATGATTCCTCTCTTTGCTGATCA 534 679 1172 Antisense
GCTCAAATGCTCAAGCGTCATGGAG 176 301 1207 Antisense
CATGGAGGAGCAGCTGTTCTCGTGA 658 209 1225 Antisense
GATCTATCTAACCCTAAACTCGTGC 605 419 1255 Antisense
GAATGCTGAGAGGCTATCCGAAATG 153 331 1323 Antisense
GAAATGCTCAATAATCTGCCGACAA 73 363 1342 Antisense
TGCCGACAAATCCCAGAGAGACACT 101 585 1358 Antisense
ATTTGGAAAACTGCCGTCTCTAGAT 196 13 1410 Antisense
ATCATTCGTTGAGTACTTCTTTTTG 650 29 1452 Antisense
GTACTTCTTTTTGGACATTATCGCA 508 459 1464 Antisense
Sequence Source Affymetrix Proprietary Database