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[190679_s_at] ADP/ATP carrier protein

Description C47E12.2 /REP_DB=WormBase Gene ID /WP=CE05446 /TR=Q18683 /GB=CAA93110.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=ADP-ATP carrier protein
Cluster 6grp_highest_10_10 > 69      6grp_high1_10_10 > 96      4grp_highest_8_8 > 35      4grp_high_8_8 > 48      6grp_highest_nonorm > 94      6grp_total > 96      4grp_total > 63      6grp_highest_sub > In      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 267
1 2 3 4 range
A 530
(3)
P 		445.5
(0.2)
P 		503
(2.1)
P 		351.7
(-3)
P 		178
B 553.9
(3)
P 		407.2
(-3)
P 		444.6
(-1.5)
P 		488.5
(0.3)
P 		147
C 619.1
(3)
P 		394
(-3)
P 		500
(-0.2)
P 		430.5
(-2)
P 		225
avr 567.7
(3) 		415.6
(-3) 		482.5
(-0.4) 		423.6
(-2.7) 		152

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 413
1 2 3 4 5 6 range
A 376.8
(-3)
P 		455
(-1.8)
P 		417.6
(-2.4)
P 		602.2
(0.6)
P 		468
(-1.6)
P 		755.3
(3)
P 		379
B 342.5
(-3)
P 		453.1
(-1)
P 		434.6
(-1.3)
P 		410.1
(-1.8)
P 		668.9
(3)
P 		652.5
(2.7)
P 		326
C 532.2
(-0.7)
P 		422
(-3)
P 		547.3
(-0.4)
P 		560.8
(-0.2)
P 		616.2
(1)
P 		714.6
(3)
P 		293
avr 417.2
(-3) 		443.4
(-2.5) 		466.5
(-2) 		524.4
(-0.8) 		584.4
(0.5) 		707.5
(3) 		290
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 153
1 2 3 4 range
A 193
(3)
P 		96.7
(-1.1)
P 		131.5
(0.4)
P 		51.5
(-3)
P 		142
B 176.6
(3)
P 		100.6
(-3)
P 		103
(-2.8)
P 		104.1
(-2.7)
P 		76
C 204.9
(3)
P 		113.3
(-1.2)
P 		174.3
(1.6)
P 		72.6
(-3)
P 		132
avr 191.5
(3) 		103.5
(-1.6) 		136.3
(0.1) 		76.1
(-3) 		115

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 202
1 2 3 4 5 6 range
A 69.5
(-3)
P 		161.8
(1.8)
P 		90.9
(-1.9)
P 		152.7
(1.4)
P 		141.2
(0.8)
P 		183.9
(3)
P 		114
B 119.2
(-2.5)
P 		150.8
(-1.4)
P 		105.5
(-3)
P 		108.6
(-2.9)
P 		271.8
(3)
P 		243.3
(2)
P 		166
C 197.3
(1)
P 		128.8
(-2.2)
P 		139.3
(-1.7)
P 		112.8
(-3)
P 		199.4
(1.1)
P 		239.2
(3)
P 		126
avr 128.7
(-2.1) 		147.1
(-1.1) 		111.9
(-3) 		124.7
(-2.3) 		204.1
(2) 		222.1
(3) 		110
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 190679_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8439
Sequence Type Exemplar sequence
Representative Public ID C47E12.2 NCBI
Target Description C47E12.2 /REP_DB=WormBase Gene ID /WP=CE05446 /TR=Q18683 /GB=CAA93110.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=ADP-ATP carrier protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069402(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069402 NCBI Caenorhabditis elegans C47E12.2 (C47E12.2) mRNA, complete cds. 11/11 None
SNAP00000021572 ENSEMBL cdna:SNAP chromosome:CEL140:IV:10002137:10003309:-1 10/11 None
GENEFINDER00000021584 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:10002137:10003309:-1 11/11 None
C47E12.2.2 ENSEMBL cdna:known chromosome:CEL140:IV:10001976:10003320:-1 gene:C47E12.2 11/11 None
C47E12.2.1 ENSEMBL cdna:known chromosome:CEL140:IV:10001976:10003480:-1 gene:C47E12.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:10002142-10003315(-) 100.0 100.0
Public Domain and Genome References
Gene Title ADP/ATP carrier protein
Ensembl C47E12.2
Entrez Gene 177858 Entrez gene
SwissProt Q18683 EMBL-EBI
WormBase CE05446 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6810 transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5743 mitochondrial inner membrane inferred from electronic annotation QuickGO AmiGO
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5215 transporter activity inferred from electronic annotation QuickGO AmiGO
5488 binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA93110 Hypothetical protein C47E12.2 [Caenorhabditis elegans] ref|NP_501803.1| C47E12.2 [Caenorhabditis elegans] 1.0E-171
blast CAE59949 Hypothetical protein CBG03436 [Caenorhabditis briggsae] 1.0E-159
blast CAA93110 Hypothetical protein C47E12.2 [Caenorhabditis elegans] ref|NP_501803.1| C47E12.2 [Caenorhabditis elegans] 1.0E-152
blast CAE59949 Hypothetical protein CBG03436 [Caenorhabditis briggsae] 1.0E-139
Protein Domains
Database ID Description E-Value
Pfam IPR001993 EMBL-EBI Mitochondrial substrate carrier 7.7E-34
Pfam IPR001993 EMBL-EBI Mitochondrial substrate carrier 7.6E-32
Pfam IPR001993 EMBL-EBI Mitochondrial substrate carrier 2.2E-20
Pfam IPR001993 EMBL-EBI Mitochondrial substrate carrier 5.1E-19
Pfam IPR001993 EMBL-EBI Mitochondrial substrate carrier 7.6E-32
Pfam IPR001993 EMBL-EBI Mitochondrial substrate carrier 7.0E-16
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_501803.1 2 185-207,222-244
C47E12.2.2 2 185-207,222-244
C47E12.2.1 2 185-207,222-244
SNAP00000021572 2 164-186,201-223
GENEFINDER00000021584 2 185-207,222-244
Sequence
Target Sequence 
>C. ELEGANS:190679_S_AT
aacgtgctctcatacagtgtcaggacactcgtctctggaggacttgctggttgctcttca
ctttgcattgtgtatccattagatttcattcgtacaaggttatctgctgatatcaatcat
cacacgaagcgagaatataaaggtcttgtggattgcacaatgaaaaccgtgaaaaatgaa
ggatttagtgcactctacagaggattcgctatttctcttcaaacatacttcatttataga
tctgtatatttcggattatacgacgctatcagaaatactataaacacggataagaagaaa
ttaccattttatgcttcgtttgccattgcacaaggtgtaaccgtactatcgtcatattta
acctacccttgggacactgtgcggcggcgaatgatggtaaaaggacagctgagcacatca
aaggctttttcagctgcacgaaaaattgtccatgaggaaggtgttcgcggattgtacaaa
ggagcgttagctaacatttttagaagcgctggtggagcacttgtcat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACGTGCTCTCATACAGTGTCAGGA 2 145 373 Antisense
TGTCAGGACACTCGTCTCTGGAGGA 615 557 390 Antisense
GTTGCTCTTCACTTTGCATTGTGTA 503 439 422 Antisense
ACAGAGGATTCGCTATTTCTCTTCA 92 107 569 Antisense
TTTATGCTTCGTTTGCCATTGCACA 634 673 680 Antisense
GTGTAACCGTACTATCGTCATATTT 37 487 707 Antisense
TTAACCTACCCTTGGGACACTGTGC 89 671 730 Antisense
GACACTGTGCGGCGGCGAATGATGG 504 367 745 Antisense
ATCAAAGGCTTTTTCAGCTGCACGA 397 27 789 Antisense
GAGGAAGGTGTTCGCGGATTGTACA 445 405 826 Antisense
GAAGCGCTGGTGGAGCACTTGTCAT 302 343 875 Antisense
Sequence Source Affymetrix Proprietary Database