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[190676_at] glucuronosyltransferase

Description F10D2.5 /REP_DB=WormBase Gene ID /WP=CE09316 /TR=O16914 /GB=AAC48235.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=glucuronosyltransferase
Cluster 6grp_highest_10_10 > 75      6grp_high1_10_10 > 56      4grp_high_8_8 > 11      6grp_highest_nonorm > 91      6grp_total > 57      4grp_total > 21      6grp_highest_sub > Cu      6grp_cgc > 37      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 217
1 2 3 4 range
A 130.7
(1.5)
P 		76.2
(-3)
P 		89.7
(-1.9)
P 		148.8
(3)
P 		73
B 175.8
(0.9)
P 		146
(0)
P 		45.4
(-3)
A 		244.2
(3)
P 		199
C 183.1
(0.2)
P 		152.7
(-0.8)
P 		91.2
(-3)
P 		262.7
(3)
P 		172
avr 163.2
(0.7) 		125
(-0.9) 		75.4
(-3) 		218.6
(3) 		143

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 204
1 2 3 4 5 6 range
A 237.6
(-0.4)
P 		186.4
(-2.3)
P 		184
(-2.3)
P 		166.2
(-3)
P 		176.9
(-2.6)
P 		329.3
(3)
P 		163
B 215.1
(-0.1)
P 		226.1
(0.2)
P 		198.1
(-0.7)
P 		195.4
(-0.8)
P 		128.2
(-3)
P 		310.1
(3)
P 		182
C 207.2
(-0.2)
P 		183.8
(-1)
P 		202.5
(-0.4)
P 		188.8
(-0.9)
P 		124.9
(-3)
P 		303.4
(3)
P 		179
avr 220
(-0.3) 		198.8
(-1.1) 		194.9
(-1.2) 		183.5
(-1.6) 		143.3
(-3) 		314.3
(3) 		171
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 50
1 2 3 4 range
A 47.6
(3)
P 		16.5
(-3)
P 		23.5
(-1.6)
P 		21.8
(-2)
P 		31
B 56.1
(3)
P 		36.1
(0.4)
P 		10.5
(-3)
A 		52
(2.5)
P 		46
C 60.6
(3)
P 		43.9
(-0.5)
P 		31.8
(-3)
P 		44.3
(-0.4)
P 		29
avr 54.8
(3) 		32.2
(-1.1) 		21.9
(-3) 		39.4
(0.2) 		33

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 78
1 2 3 4 5 6 range
A 43.8
(-2.4)
P 		66.3
(0.9)
P 		40.1
(-3)
P 		42.1
(-2.7)
P 		53.4
(-1)
P 		80.2
(3)
P 		40
B 74.9
(-0.6)
P 		75.3
(-0.6)
P 		48.1
(-3)
P 		51.8
(-2.7)
P 		52.1
(-2.6)
P 		115.6
(3)
P 		68
C 76.8
(0.7)
P 		56.1
(-1.3)
P 		51.5
(-1.7)
P 		38
(-3)
P 		40.4
(-2.8)
P 		101.6
(3)
P 		64
avr 65.2
(-0.7) 		65.9
(-0.6) 		46.6
(-2.7) 		44
(-3) 		48.6
(-2.5) 		99.1
(3) 		55
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190676_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11305
Sequence Type Exemplar sequence
Representative Public ID F10D2.5 NCBI
Target Description F10D2.5 /REP_DB=WormBase Gene ID /WP=CE09316 /TR=O16914 /GB=AAC48235.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=glucuronosyltransferase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072409(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072409 NCBI Caenorhabditis elegans F10D2.5 (glucuronosyltransferase) mRNA, complete cds. 9/11 None
GENEFINDER00000033819 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:7142194:7144534:-1 11/11 None
F10D2.5 ENSEMBL cdna:known chromosome:CEL140:V:7142194:7144534:-1 gene:F10D2.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000033807 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7142194-7144535(-) 100.0 100.0
Public Domain and Genome References
Gene Title glucuronosyltransferase
Gene Symbol ugt-40
Ensembl F10D2.5
Entrez Gene 184292 Entrez gene
SwissProt O16914 EMBL-EBI
WormBase CE38500 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_504810 F10D2.5 [Caenorhabditis elegans] gb|AAC48235.2| Hypothetical protein F10D2.5 [Caenorhabditis elegans] 0.0
blast CAE70495 Hypothetical protein CBG17093 [Caenorhabditis briggsae] 1.0E-140
blast NP_504816 F10D2.2a [Caenorhabditis elegans] gb|AAC48233.2| Hypothetical protein F10D2.2a [Caenorhabditis elegans] 1.0E-139
blast CAE70495 Hypothetical protein CBG17093 [Caenorhabditis briggsae] 1.0E-137
blast NP_504816 F10D2.2a [Caenorhabditis elegans] gb|AAC48233.2| Hypothetical protein F10D2.2a [Caenorhabditis elegans] 1.0E-136
Protein Domains
Database ID Description E-Value
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 6.9E-13
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 1.6E-18
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504810.2 2 7-29,490-512
F10D2.5 2 7-29,506-528
GENEFINDER00000033819 2 7-29,506-528
Sequence
Target Sequence 
>C. ELEGANS:190676_AT
gtaacaatgcttttaatttcaccgaaatacatatttacgtaactgaatccgatccccgtt
tatcagcttttatgactcatggaggtttgggaagtgtcaatgaagtcagttactttggaa
aaccaacgatcatgtgtccactttctggcgatcagatgagaaatgccaaaatgcttgaac
gtcacaacggatctatagaattttcaaagtatgatctacacaatgagaaagttgtcgcaa
atgcttttcgaaaaattttatacgatgaaagttacacactatctgcaaaacggctctccg
aacatctccaattccaacccgtaaaacctaaagaactatttctgaagcatgtcgaattcg
cagcaaggtttggaaaactgccatcattggatccatattctcggcagatgggattcattc
aatattttcttattgacattgcatttattgtactgactgtggttttgactattgtttcgg
tgttatactttgtgctga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTAACAATGCTTTTAATTTCACCGA 559 461 1100 Antisense
TTACGTAACTGAATCCGATCCCCGT 373 679 1134 Antisense
ATCCCCGTTTATCAGCTTTTATGAC 295 37 1151 Antisense
AACCAACGATCATGTGTCCACTTTC 318 147 1220 Antisense
TGTGTCCACTTTCTGGCGATCAGAT 702 555 1232 Antisense
AATGCTTGAACGTCACAACGGATCT 218 165 1269 Antisense
ACTATCTGCAAAACGGCTCTCCGAA 129 103 1377 Antisense
GGAAAACTGCCATCATTGGATCCAT 119 529 1471 Antisense
ATTGGATCCATATTCTCGGCAGATG 352 3 1485 Antisense
GACTGTGGTTTTGACTATTGTTTCG 681 375 1554 Antisense
GTTTCGGTGTTATACTTTGTGCTGA 662 449 1573 Antisense
Sequence Source Affymetrix Proprietary Database