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[190675_at]

Description T11G6.1 /REP_DB=WormBase Gene ID /WP=CE06427 /TR=Q22408 /GB=CAA93416.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=histidyl-tRNA synthetase
Cluster 6grp_highest_10_10 > 12      6grp_high1_10_10 > 46      4grp_highest_8_8 > 13      4grp_high_8_8 > 23      6grp_highest_nonorm > 76      6grp_total > 08      4grp_total > 24      6grp_cgc > 35      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      6grp_total_sub > Decrease      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 631
1 2 3 4 range
A 1249.6
(-3)
P 		1364.5
(-1.6)
P 		1470.5
(-0.3)
P 		1747.2
(3)
P 		498
B 1213
(-2.9)
P 		1203.9
(-3)
P 		1432.3
(-0.4)
P 		1730.5
(3)
P 		527
C 1116.3
(-3)
P 		1337.7
(0.2)
P 		1533.5
(3)
P 		1524.4
(2.9)
P 		417
avr 1193
(-3) 		1302
(-1.6) 		1478.8
(0.6) 		1667.4
(3) 		474

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 593
1 2 3 4 5 6 range
A 1277.4
(0.5)
P 		1308
(0.8)
P 		1032.9
(-2)
P 		1528.7
(3)
P 		935.6
(-3)
P 		1511.3
(2.8)
P 		593
B 1305.1
(3)
P 		1093
(-0.7)
P 		1272.1
(2.4)
P 		1104
(-0.5)
P 		958.4
(-3)
P 		1121.2
(-0.2)
P 		347
C 1529
(3)
P 		1124
(-2.3)
P 		1418.1
(1.6)
P 		1344.1
(0.6)
P 		1096.7
(-2.6)
P 		1067.6
(-3)
P 		461
avr 1370.5
(3) 		1175
(-0.1) 		1241
(0.9) 		1325.6
(2.3) 		996.9
(-3) 		1233.4
(0.8) 		374
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 279
1 2 3 4 range
A 455
(3)
P 		296.2
(-1.8)
P 		384.4
(0.9)
P 		255.8
(-3)
P 		199
B 386.8
(3)
P 		297.3
(-3)
P 		331.9
(-0.7)
P 		368.8
(1.8)
P 		90
C 369.5
(-0.6)
P 		384.6
(-0.2)
P 		534.5
(3)
P 		257
(-3)
P 		278
avr 403.8
(2.4) 		326
(-1.4) 		416.9
(3) 		293.9
(-3) 		123

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 342
1 2 3 4 5 6 range
A 235.5
(-2.7)
P 		465.2
(3)
P 		224.9
(-3)
P 		387.7
(1.1)
P 		282.3
(-1.6)
P 		368
(0.6)
P 		240
B 454.1
(3)
P 		363.8
(-0.4)
P 		308.9
(-2.4)
P 		292.4
(-3)
P 		389.4
(0.6)
P 		418.1
(1.7)
P 		162
C 566.7
(3)
P 		343
(-1.5)
P 		360.9
(-1.2)
P 		270.3
(-3)
P 		354.9
(-1.3)
P 		357.4
(-1.2)
P 		296
avr 418.8
(3) 		390.7
(1.6) 		298.2
(-3) 		316.8
(-2.1) 		342.2
(-0.8) 		381.2
(1.1) 		121
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190675_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10059
Sequence Type Exemplar sequence
Representative Public ID T11G6.1 NCBI
Target Description T11G6.1 /REP_DB=WormBase Gene ID /WP=CE06427 /TR=Q22408 /GB=CAA93416.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=histidyl-tRNA synthetase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001028202(11), NM_001028203(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001028202 NCBI Caenorhabditis elegans Histidyl tRNA Synthetase family member (hrs-1) (hrs-1) mRNA, complete cds. 11/11 None
NM_001028203 NCBI Caenorhabditis elegans Histidyl tRNA Synthetase family member (hrs-1) (hrs-1) mRNA, complete cds. 11/11 None
SNAP00000000768 ENSEMBL cdna:SNAP chromosome:CEL140:IV:10859292:10861046:1 11/11 None
GENEFINDER00000000773 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:10858951:10861046:1 11/11 None
T11G6.1a ENSEMBL cdna:known chromosome:CEL140:IV:10858928:10861258:1 gene:T11G6.1 11/11 None
T11G6.1b ENSEMBL cdna:known chromosome:CEL140:IV:10859288:10861046:1 gene:T11G6.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:10858956-10861052(+) 100.0 100.0
Public Domain and Genome References
Ensembl T11G6.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA93416 Hypothetical protein T11G6.1a [Caenorhabditis elegans] ref|NP_001023373.1| Histidyl tRNA Synthetase family member (hrs-1) [Caenorhabditis elegans] 0.0
blast CAD89746 Hypothetical protein T11G6.1b [Caenorhabditis elegans] ref|NP_001023374.1| Histidyl tRNA Synthetase family member (hrs-1) [Caenorhabditis elegans] sp|P34183|SYH_CAEEL Histidyl-tRNA synthetase (Histidine--tRNA ligase) (HisRS) 0.0
blast CAE70836 Hypothetical protein CBG17616 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR004154 EMBL-EBI Anticodon binding domain 2.4E-23
Pfam IPR002314 EMBL-EBI tRNA synthetases, class-II (G, H, P and S) 4.2E-32
Pfam IPR004154 EMBL-EBI Anticodon binding domain 2.4E-23
Pfam IPR002314 EMBL-EBI tRNA synthetases, class-II (G, H, P and S) 4.2E-32
Pfam IPR004154 EMBL-EBI Anticodon binding domain 2.4E-23
Pfam IPR002314 EMBL-EBI tRNA synthetases, class-II (G, H, P and S) 4.2E-32
Sequence
Target Sequence 
>C. ELEGANS:190675_AT
ggagtgaccactgttcgatacgaaccatcccttgccagaggtcttgattattatacaggt
gcaatctatgaagcagtcgctcctaaagctcttgaaggaactgctgttgaaaactcagag
gatactgctggacaaccagtcggagtaggatcagtagctgccggtggacgatacgatgga
ttggttaaaatgttcgactcaaaagccaatgttccatgttgcggtgtttcttttggtatc
gaacgtctgtttgctatcatggaagctcgacagaaagttgccattcgtacgacgcaaacc
gaagtctatgttgcatctgctcaaaagaatttggtcagggatcgcaagaagttggtaaag
atgcttcgatctgctggaatcaagactgaaatggcactgaaggctaatccgaaattgtta
acgcaattccagtatgctgaggaaagacgtattccgcttgctattgttat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAGTGACCACTGTTCGATACGAAC 707 515 985 Antisense
CCATCCCTTGCCAGAGGTCTTGATT 89 271 1009 Antisense
TGAAGCAGTCGCTCCTAAAGCTCTT 551 573 1053 Antisense
GGATCAGTAGCTGCCGGTGGACGAT 64 493 1132 Antisense
AAGCCAATGTTCCATGTTGCGGTGT 311 149 1187 Antisense
GTTGCGGTGTTTCTTTTGGTATCGA 373 439 1202 Antisense
GGTATCGAACGTCTGTTTGCTATCA 145 505 1219 Antisense
GTTGCCATTCGTACGACGCAAACCG 197 439 1261 Antisense
CGAAGTCTATGTTGCATCTGCTCAA 441 253 1284 Antisense
GATGCTTCGATCTGCTGGAATCAAG 253 413 1344 Antisense
GACGTATTCCGCTTGCTATTGTTAT 635 377 1430 Antisense
Sequence Source Affymetrix Proprietary Database