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[190674_at]

Description T09A12.2 /REP_DB=WormBase Gene ID /WP=CE17231 /TR=O45183 /GB=AAC04432.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=glutathione peroxidase
Cluster 6grp_highest_10_10 > 16      6grp_high1_10_10 > 51      4grp_highest_8_8 > 31      4grp_high_8_8 > 05      6grp_highest_nonorm > 53      6grp_total > 62      4grp_total > 03      6grp_highest_sub > 03_04      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 862
1 2 3 4 range
A 372.7
(-1.8)
P 		338.5
(-2.1)
P 		235.2
(-3)
P 		898.5
(3)
P 		663
B 347
(-2)
P 		250.6
(-2.7)
P 		213.9
(-3)
P 		994.4
(3)
P 		781
C 415.3
(-1.9)
P 		322.6
(-2.6)
P 		268.2
(-3)
P 		1076.2
(3)
P 		808
avr 378.3
(-1.9) 		303.9
(-2.5) 		239.1
(-3) 		989.7
(3) 		751

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1001
1 2 3 4 5 6 range
A 622.7
(-1)
P 		773.2
(-0)
P 		1246.4
(3)
P 		1135.3
(2.3)
P 		683.3
(-0.6)
P 		307.9
(-3)
P 		939
B 612
(-1.5)
P 		1063.7
(1.4)
P 		1308.7
(3)
P 		1009.6
(1.1)
P 		881
(0.2)
P 		375.9
(-3)
P 		933
C 621.7
(-0.8)
P 		916.1
(1.8)
P 		920.7
(1.8)
P 		1050.4
(3)
P 		668.7
(-0.4)
P 		380.1
(-3)
P 		670
avr 618.8
(-1) 		917.7
(1.2) 		1158.6
(3) 		1065.1
(2.3) 		744.3
(-0.1) 		354.6
(-3) 		804
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 162
1 2 3 4 range
A 135.7
(3)
P 		73.5
(-2)
P 		61.5
(-3)
P 		131.5
(2.7)
P 		74
B 110.7
(-0.7)
P 		61.9
(-2.5)
P 		49.6
(-3)
P 		211.9
(3)
P 		162
C 137.5
(0)
P 		92.8
(-3)
P 		93.5
(-3)
P 		181.5
(3)
P 		89
avr 128
(0.4) 		76.1
(-2.6) 		68.2
(-3) 		175
(3) 		107

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 283
1 2 3 4 5 6 range
A 114.8
(-1.9)
P 		275
(2.6)
P 		271.4
(2.5)
P 		287.9
(3)
P 		206.2
(0.7)
P 		75
(-3)
P 		213
B 212.9
(-1)
P 		354.1
(2.9)
P 		317.8
(1.9)
P 		267.4
(0.5)
P 		357.9
(3)
P 		140.2
(-3)
P 		218
C 230.4
(1.1)
P 		279.5
(3)
P 		234.3
(1.2)
P 		211.2
(0.3)
P 		216.4
(0.5)
P 		127.3
(-3)
P 		152
avr 186
(-0.7) 		302.9
(3) 		274.5
(2.1) 		255.5
(1.5) 		260.2
(1.6) 		114.2
(-3) 		189
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190674_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10293
Sequence Type Exemplar sequence
Representative Public ID T09A12.2 NCBI
Target Description T09A12.2 /REP_DB=WormBase Gene ID /WP=CE17231 /TR=O45183 /GB=AAC04432.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=glutathione peroxidase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001028196(11), NM_001028197(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001028196 NCBI Caenorhabditis elegans T09A12.2a (T09A12.2) mRNA, complete cds. 11/11 None
NM_001028197 NCBI Caenorhabditis elegans T09A12.2b (T09A12.2) mRNA, complete cds. 11/11 None
GENEFINDER00000044395 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:8222213:8223371:1 11/11 None
T09A12.2a ENSEMBL cdna:known chromosome:CEL140:IV:8222185:8223335:1 gene:T09A12.2 11/11 None
T09A12.2b ENSEMBL cdna:known chromosome:CEL140:IV:8222213:8223371:1 gene:T09A12.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:8222218-8223377(+) 100.0 100.0
Public Domain and Genome References
Ensembl T09A12.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAQ01522 Hypothetical protein T09A12.2b [Caenorhabditis elegans] ref|NP_001023368.1| T09A12.2b [Caenorhabditis elegans] 1.0E-107
blast CAE58440 Hypothetical protein CBG01576 [Caenorhabditis briggsae] 2.0E-88
blast AAC04432 Hypothetical protein T09A12.2a [Caenorhabditis elegans] ref|NP_001023367.1| T09A12.2a [Caenorhabditis elegans] 9.0E-69
blast AAQ01522 Hypothetical protein T09A12.2b [Caenorhabditis elegans] ref|NP_001023368.1| T09A12.2b [Caenorhabditis elegans] 5.0E-68
Protein Domains
Database ID Description E-Value
Pfam IPR000889 EMBL-EBI Glutathione peroxidase 4.4E-32
Pfam IPR000889 EMBL-EBI Glutathione peroxidase 9.8E-46
Sequence
Target Sequence 
>C. ELEGANS:190674_AT
gaatggtcgatccctaatattttccattttattcgttttttctgagctaaaatgtgacga
tactgatgaaaatgaccaacatggtacaatttaccaatttcaagcaaagaatatcgatgg
gaaaatggtttctatggagaagtatagagacaaagtggttttgttcacaaatgttgcatc
atactgtggatatacagattctaattacaacgcttttaaagaattagatggaatctacag
ggaaaaaggatttcgagttgccgcgtttccatgcaatcaatttgaaaaacaagaaccaga
aactgaaggaaaaatcttagattttgtgaaaagcagttatacatatgcgccagatatgta
ttcaaagatcgaggtaaatggtcagaacactcatccactttggaaattcttgaaaaaaga
gcgtggctcatcattatcagctgatattccttggaacttttccaaatttcttgttgataa
gaatggtcatgtggttggaagatactcacattctgtcaacccaatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATGGTCGATCCCTAATATTTTCC 679 331 15 Antisense
TGTTGCATCATACTGTGGATATACA 48 563 186 Antisense
ACAGATTCTAATTACAACGCTTTTA 195 109 208 Antisense
GAAAAAGGATTTCGAGTTGCCGCGT 241 355 256 Antisense
TGCCGCGTTTCCATGCAATCAATTT 373 585 273 Antisense
AGCAGTTATACATATGCGCCAGATA 45 79 346 Antisense
AATGGTCAGAACACTCATCCACTTT 315 163 391 Antisense
GAGCGTGGCTCATCATTATCAGCTG 61 387 433 Antisense
TTATCAGCTGATATTCCTTGGAACT 675 679 448 Antisense
TGGTCATGTGGTTGGAAGATACTCA 320 551 498 Antisense
ATACTCACATTCTGTCAACCCAATT 460 23 516 Antisense
Sequence Source Affymetrix Proprietary Database