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[190670_at] Zinc finger, C2H2 type

Description T07G12.11 /REP_DB=WormBase Gene ID /WP=CE21166 /TR=O18065 /GB=CAB05278.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=Zinc finger, C2H2 type
Cluster 6grp_total > 96      4grp_total > 01      6grp_cgc > 78      6grp_cgc_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 76
1 2 3 4 range
A 49.8
(-3)
A 		53.6
(-2.7)
A 		62
(-1.9)
A 		117.2
(3)
P 		67
B 64.2
(0.3)
P 		41
(-3)
A 		53.4
(-1.2)
A 		83.4
(3)
P 		42
C 58.5
(-1.5)
A 		41.1
(-3)
A 		70.4
(-0.4)
M 		108.5
(3)
P 		67
avr 57.5
(-1.7) 		45.2
(-3) 		61.9
(-1.3) 		103
(3) 		58

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 272
1 2 3 4 5 6 range
A 37.8
(-2.9)
A 		31.8
(-3)
A 		83.6
(-1.8)
P 		89.4
(-1.7)
P 		228.1
(1.4)
P 		301.4
(3)
P 		270
B 29.8
(-3)
A 		38.2
(-2.8)
A 		73.1
(-2)
A 		135.5
(-0.5)
P 		233
(1.9)
P 		278.9
(3)
P 		249
C 56.3
(-3)
A 		55.6
(-3)
A 		100.5
(-1.6)
P 		163.4
(0.4)
P 		229.3
(2.5)
P 		244.6
(3)
P 		189
avr 41.3
(-3) 		41.9
(-3) 		85.7
(-1.9) 		129.4
(-0.7) 		230.1
(1.8) 		275
(3) 		234
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 18.1
(3)
A 		11.6
(-3)
A 		16.2
(1.2)
A 		17.2
(2.2)
P 		7
B 20.5
(3)
P 		10.1
(-3)
A 		12.4
(-1.7)
A 		17.8
(1.4)
P 		10
C 19.4
(0.6)
A 		11.8
(-3)
A 		24.5
(3)
M 		18.3
(0.1)
P 		13
avr 19.3
(3) 		11.2
(-3) 		17.7
(1.8) 		17.8
(1.9) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 97
1 2 3 4 5 6 range
A 7
(-3)
A 		11.3
(-2.6)
A 		18.2
(-2)
P 		22.7
(-1.6)
P 		68.8
(2.6)
P 		73.4
(3)
P 		66
B 10.4
(-3)
A 		12.7
(-2.9)
A 		17.8
(-2.5)
A 		35.9
(-1.4)
P 		94.7
(2.4)
P 		104
(3)
P 		94
C 20.9
(-2.6)
A 		17
(-3)
A 		25.6
(-2.2)
P 		32.9
(-1.5)
P 		74.2
(2.3)
P 		81.9
(3)
P 		65
avr 12.8
(-3) 		13.7
(-2.9) 		20.5
(-2.4) 		30.5
(-1.6) 		79.2
(2.4) 		86.4
(3) 		74
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190670_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8523
Sequence Type Exemplar sequence
Representative Public ID T07G12.11 NCBI
Target Description T07G12.11 /REP_DB=WormBase Gene ID /WP=CE21166 /TR=O18065 /GB=CAB05278.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=Zinc finger, C2H2 type
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069552(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069552 NCBI Caenorhabditis elegans T07G12.11 (T07G12.11) mRNA, complete cds. 11/11 None
SNAP00000026263 ENSEMBL cdna:SNAP chromosome:CEL140:IV:10558693:10560899:1 11/11 None
GENEFINDER00000026270 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:10555621:10560899:1 11/11 None
T07G12.11 ENSEMBL cdna:known chromosome:CEL140:IV:10558693:10560899:1 gene:T07G12.11 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:10558698-10560905(+) 100.0 100.0
Public Domain and Genome References
Gene Title Zinc finger, C2H2 type
Gene Symbol zim-3
Ensembl T07G12.11
Entrez Gene 188246 Entrez gene
SwissProt O18065 EMBL-EBI
WormBase CE21166 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
8152 metabolism inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3676 nucleic acid binding inferred from electronic annotation QuickGO AmiGO
8270 zinc ion binding inferred from electronic annotation QuickGO AmiGO
16491 oxidoreductase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB05278 Hypothetical protein T07G12.11 [Caenorhabditis elegans] ref|NP_501953.1| T07G12.11 [Caenorhabditis elegans] 0.0
blast CAB05277 Hypothetical protein T07G12.6 [Caenorhabditis elegans] 0.0
blast CAB05280 Hypothetical protein T07G12.10 [Caenorhabditis elegans] ref|NP_501952.1| T07G12.10 [Caenorhabditis elegans] 0.0
Sequence
Target Sequence 
>C. ELEGANS:190670_AT
tcgtttgctgttccagttgtccaacgtcttaacaagcgaaacgagcaaatgaataaaaat
catattattaaatgtaatttcgaaggttgtaagcaaattctctcgtggaaacttcgatac
ggcaaacaacgacttctggatcatgcaatgactcatgaaaatgaaaagtgtctcgtttgt
cgcacatgtgaatactcttgcagtacacatccccaaatgaagtatcactatcaaaaaatg
catccagaagtgaggtgtgatgggtttaatattcagaaagtgttcaatatcgaatttgat
gaagtggcgattttcgatcttttccaaaagtgcttcggagcacattcttccatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCGTTTGCTGTTCCAGTTGTCCAAC 451 603 1264 Antisense
GTTGTCCAACGTCTTAACAAGCGAA 499 395 1279 Antisense
GGTTGTAAGCAAATTCTCTCGTGGA 129 509 1348 Antisense
CTCTCGTGGAAACTTCGATACGGCA 8 221 1363 Antisense
GATACGGCAAACAACGACTTCTGGA 380 423 1379 Antisense
AACGACTTCTGGATCATGCAATGAC 37 145 1391 Antisense
GAAAAGTGTCTCGTTTGTCGCACAT 14 355 1426 Antisense
GTCGCACATGTGAATACTCTTGCAG 304 475 1442 Antisense
TCTTGCAGTACACATCCCCAAATGA 270 617 1459 Antisense
GAAGTGGCGATTTTCGATCTTTTCC 597 335 1564 Antisense
GTGCTTCGGAGCACATTCTTCCATC 636 479 1593 Antisense
Sequence Source Affymetrix Proprietary Database