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[190669_at] glutathione S-transferase

Description R11G1.3 /REP_DB=WormBase Gene ID /WP=CE04834 /TR=Q21945 /GB=AAA82318.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=glutathione transferase
Cluster 6grp_total > 23      4grp_total > 39      6grp_cgc > 70      6grp_total_sub > Decrease      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 172
1 2 3 4 range
A 254.4
(3)
P 		149.3
(-1.4)
A 		110.8
(-3)
A 		155.4
(-1.1)
A 		144
B 282.5
(3)
P 		119.5
(-2.7)
A 		110.1
(-3)
A 		123.6
(-2.5)
P 		172
C 241
(3)
P 		155.4
(-2.2)
A 		141.6
(-3)
A 		153.3
(-2.3)
A 		99
avr 259.3
(3) 		141.4
(-2.1) 		120.8
(-3) 		144.1
(-2) 		139

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 168
1 2 3 4 5 6 range
A 157.7
(2.3)
A 		158.7
(2.4)
A 		171
(3)
M 		119.1
(0.4)
A 		128
(0.9)
A 		49.1
(-3)
A 		122
B 217
(3)
P 		188.6
(1.7)
A 		196.1
(2.1)
A 		133.5
(-0.7)
A 		109
(-1.8)
A 		81.1
(-3)
A 		136
C 165
(3)
A 		154.6
(2.4)
A 		153.2
(2.3)
A 		76
(-2.6)
A 		69
(-3)
A 		104.4
(-0.8)
A 		96
avr 179.9
(3) 		167.3
(2.3) 		173.4
(2.6) 		109.5
(-1.2) 		102
(-1.6) 		78.2
(-3) 		102
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 70
1 2 3 4 range
A 92.6
(3)
P 		32.4
(-2.2)
A 		29
(-2.5)
A 		22.8
(-3)
A 		70
B 90.1
(3)
P 		29.5
(-2.6)
A 		25.5
(-3)
A 		26.3
(-2.9)
P 		65
C 79.8
(3)
P 		44.7
(-0.9)
A 		49.4
(-0.4)
A 		25.9
(-3)
A 		54
avr 87.5
(3) 		35.5
(-2) 		34.6
(-2.1) 		25
(-3) 		63

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 64
1 2 3 4 5 6 range
A 29.1
(-0.7)
A 		56.5
(3)
A 		37.2
(0.4)
M 		30.2
(-0.5)
A 		38.6
(0.6)
A 		12
(-3)
A 		45
B 75.5
(3)
P 		62.8
(1.3)
A 		47.6
(-0.7)
A 		35.4
(-2.3)
A 		44.3
(-1.1)
A 		30.2
(-3)
A 		45
C 61.2
(3)
A 		47.2
(1.2)
A 		39
(0.1)
A 		15.3
(-3)
A 		22.3
(-2.1)
A 		35
(-0.4)
A 		46
avr 55.3
(3) 		55.5
(3) 		41.3
(0.1) 		27
(-2.7) 		35.1
(-1.1) 		25.7
(-3) 		30
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190669_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18413
Sequence Type Exemplar sequence
Representative Public ID R11G1.3 NCBI
Target Description R11G1.3 /REP_DB=WormBase Gene ID /WP=CE04834 /TR=Q21945 /GB=AAA82318.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=glutathione transferase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076224(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076224 NCBI Caenorhabditis elegans Glutathione S-Transferase family member (gst-11) (gst-11) mRNA, complete cds. 11/11 None
SNAP00000030131 ENSEMBL cdna:SNAP chromosome:CEL140:X:3632542:3633737:-1 11/11 None
GENEFINDER00000030139 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:3632542:3633734:-1 11/11 None
R11G1.3 ENSEMBL cdna:known chromosome:CEL140:X:3632542:3633734:-1 gene:R11G1.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:3632542-3633735(-) 100.0 100.0
Public Domain and Genome References
Gene Title glutathione S-transferase
Gene Symbol gst-11
Ensembl R11G1.3
Entrez Gene 187817 Entrez gene
SwissProt Q21945 EMBL-EBI
WormBase CE04834 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA82318 Glutathione s-transferase protein 11 [Caenorhabditis elegans] ref|NP_508625.1| Glutathione S-Transferase family member (gst-11) [Caenorhabditis elegans] 1.0E-114
blast AAA82318 Glutathione s-transferase protein 11 [Caenorhabditis elegans] ref|NP_508625.1| Glutathione S-Transferase family member (gst-11) [Caenorhabditis elegans] 1.0E-111
blast CAE68457 Hypothetical protein CBG14247 [Caenorhabditis briggsae] 1.0E-105
blast CAE68457 Hypothetical protein CBG14247 [Caenorhabditis briggsae] 1.0E-103
blast AAG44695 glutathione S-transferase Ia [Onchocerca volvulus] 5.0E-41
blast AAG44695 glutathione S-transferase Ia [Onchocerca volvulus] 1.0E-40
Protein Domains
Database ID Description E-Value
Pfam IPR004046 EMBL-EBI Glutathione S-transferase, C-terminal 2.8E-9
Pfam IPR004045 EMBL-EBI Glutathione S-transferase, N-terminal 3.9E-15
Pfam IPR004046 EMBL-EBI Glutathione S-transferase, C-terminal 2.8E-9
Pfam IPR004045 EMBL-EBI Glutathione S-transferase, N-terminal 3.9E-15
Pfam IPR004046 EMBL-EBI Glutathione S-transferase, C-terminal 2.8E-9
Sequence
Target Sequence 
>C. ELEGANS:190669_AT
agagctgagcccgcaaggcttatcttcgcctacgcaggagtgcagtacacggatgaaaga
gtggaaaagtcggcatggccggaaattaaagcaacaacaccacatggaaagctgccagtt
ttatatgtggatggtgcaaaattggctcaaagtagggttatcgagcgttatcttggaaag
gtatttggacttgccggagaaacagactgggagactgcaaagatggatgagcttgtggca
tgtgttgaggattttctcatcgaaattcaaccgtggttcaaagaacaagataatgctaaa
aaggtagaaatcttcaaaaaactcatcgaaagcacaatcattccgttcatcagcgcgttt
gaaaacattctcgtcacaaatggaaccggttactttgtaggtgataagatatcctacgcc
gatcttgccattttccacattttctggtttatgaactccaaaatcttgcctggtgcactt
cgaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGAGCTGAGCCCGCAAGGCTTATCT 31 69 49 Antisense
ATCTTCGCCTACGCAGGAGTGCAGT 419 31 70 Antisense
AACACCACATGGAAAGCTGCCAGTT 550 135 144 Antisense
GTAGGGTTATCGAGCGTTATCTTGG 439 255 200 Antisense
GGTATTTGGACTTGCCGGAGAAACA 181 505 228 Antisense
GAGCTTGTGGCATGTGTTGAGGATT 206 389 277 Antisense
TTCTCATCGAAATTCAACCGTGGTT 131 683 302 Antisense
AGCACAATCATTCCGTTCATCAGCG 63 75 379 Antisense
GCGCGTTTGAAAACATTCTCGTCAC 292 287 401 Antisense
ATAAGATATCCTACGCCGATCTTGC 325 25 452 Antisense
AAATCTTGCCTGGTGCACTTCGAAA 133 117 509 Antisense
Sequence Source Affymetrix Proprietary Database