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[190668_at] tyrosine-protein kinase

Description D1073.1 /REP_DB=WormBase Gene ID /WP=CE09056 /TR=Q94183 /GB=AAB09104.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=tyrosine-protein kinase
Cluster 6grp_high1_10_10 > 26      6grp_total > 26      4grp_total > 13      6grp_high1_sub > De      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 311
1 2 3 4 range
A 141.7
(0.4)
P 		120
(-0.4)
A 		41.3
(-3)
A 		220.2
(3)
P 		179
B 189.2
(0.9)
P 		59.4
(-3)
A 		77
(-2.5)
A 		260.9
(3)
P 		202
C 206.3
(-0.3)
P 		107.7
(-2.5)
A 		84.9
(-3)
A 		351.8
(3)
P 		267
avr 179.1
(0.2) 		95.7
(-2.2) 		67.7
(-3) 		277.6
(3) 		210

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 124
1 2 3 4 5 6 range
A 165.6
(3)
P 		119.1
(-0.6)
P 		87.9
(-3)
A 		121.3
(-0.4)
M 		116.6
(-0.8)
P 		128.1
(0.1)
P 		78
B 194.3
(3)
P 		169.2
(1.6)
P 		133.6
(-0.5)
P 		89.7
(-3)
P 		115.2
(-1.5)
P 		122.1
(-1.1)
P 		105
C 146.7
(1.3)
P 		177.2
(3)
P 		94.5
(-1.7)
P 		114.7
(-0.5)
P 		70.7
(-3)
A 		134.2
(0.6)
P 		107
avr 168.9
(3) 		155.2
(1.8) 		105.3
(-2.6) 		108.6
(-2.3) 		100.8
(-3) 		128.1
(-0.6) 		68
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 58
1 2 3 4 range
A 51.6
(3)
P 		26.1
(-0.8)
A 		10.8
(-3)
A 		32.2
(0.1)
P 		41
B 60.3
(3)
P 		14.7
(-3)
A 		17.8
(-2.6)
A 		55.6
(2.4)
P 		46
C 68.3
(3)
P 		31
(-2.8)
A 		29.6
(-3)
A 		59.3
(1.6)
P 		39
avr 60.1
(3) 		23.9
(-2.3) 		19.4
(-3) 		49
(1.4) 		41

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 49
1 2 3 4 5 6 range
A 30.5
(-0.1)
P 		42.4
(3)
P 		19.1
(-3)
A 		30.8
(0)
M 		35.2
(1.1)
P 		31.2
(0.1)
P 		23
B 67.6
(3)
P 		56.3
(1.5)
P 		32.4
(-1.8)
P 		23.8
(-3)
P 		46.8
(0.2)
P 		45.5
(-0)
P 		44
C 54.4
(3)
P 		54.1
(2.9)
P 		24
(-2.8)
P 		23.1
(-3)
P 		22.9
(-3)
A 		44.9
(1.2)
P 		32
avr 50.8
(3) 		50.9
(3) 		25.2
(-3) 		25.9
(-2.8) 		35
(-0.7) 		40.5
(0.6) 		26
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190668_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16442
Sequence Type Exemplar sequence
Representative Public ID D1073.1 NCBI
Target Description D1073.1 /REP_DB=WormBase Gene ID /WP=CE09056 /TR=Q94183 /GB=AAB09104.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=tyrosine-protein kinase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077111
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
D1073.1 ENSEMBL cdna:known chromosome:CEL140:X:8942325:8948799:-1 gene:D1073.1 None
NM_077111 NCBI Caenorhabditis elegans D1073.1 (D1073.1) mRNA, complete cds. A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000027470 6/11 Cross Hyb Matching Probes None
GENEFINDER00000027473 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:8941329-8944009(-) 100.0 100.0
Public Domain and Genome References
Gene Title tyrosine-protein kinase
Ensembl D1073.1
Entrez Gene 183575 Entrez gene
SwissProt Q94183 EMBL-EBI
WormBase CE34285 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6468 protein amino acid phosphorylation inferred from electronic annotation QuickGO AmiGO
30001 metal ion transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4672 protein kinase activity inferred from electronic annotation QuickGO AmiGO
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
46872 metal ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB09104 Hypothetical protein D1073.1 [Caenorhabditis elegans] ref|NP_509512.3| D1073.1 [Caenorhabditis elegans] 0.0
blast T15814 hypothetical protein C48C5.2 - Caenorhabditis elegans 1.0E-129
blast CAE57317 Hypothetical protein CBG00240 [Caenorhabditis briggsae] 1.0E-124
Protein Domains
Database ID Description E-Value
Pfam IPR000719 EMBL-EBI Protein kinase 3.4E-23
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_509512.3 1 211-230
D1073.1 1 211-230
Sequence
Target Sequence 
>C. ELEGANS:190668_AT
atttgcaatatccaccaccattggttattgatgagctgaagtggataatcaaagagataa
ccactggtctcgtttatcttgttgagcagtcgattgtccatcgtgacttggcagcaagaa
actgtttagtagcgggagattcagatttgaaagcaacaagtcattttgaacggccaccga
ttagagtgaaggcgagcatgagaccattaaaaccggaacgatgtccacaagatatgtatg
atttgatggtcaagtgttggcacatggagccagttaaacgaataacagcgaaacaaattc
tcgaagacgagcttttcgacaaaattcgcgagggactcccttacagggctgcgaatgagg
ctaacagtttagtgagctcgtgcatgttgaatatcaatagatacaaagatgttgtcgcgg
aaacgagcttcaccacagacccactaaactcatctgagattgaagtgaacgatgtaccta
ctgaaaatggaaaagtcaacggacaaactgtcgagaaggctgaatacgaaaagtctgaat
cagagtctgattctggcgctgttacattcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTTGCAATATCCACCACCATTGGT 407 13 185 Antisense
TAACCACTGGTCTCGTTTATCTTGT 685 627 242 Antisense
CTTGTTGAGCAGTCGATTGTCCATC 192 219 262 Antisense
GATTGTCCATCGTGACTTGGCAGCA 166 435 276 Antisense
AAGTCATTTTGAACGGCCACCGATT 494 155 342 Antisense
GACGAGCTTTTCGACAAAATTCGCG 203 379 490 Antisense
ATTCGCGAGGGACTCCCTTACAGGG 391 7 508 Antisense
AGTGAGCTCGTGCATGTTGAATATC 383 59 555 Antisense
TGTCGCGGAAACGAGCTTCACCACA 581 557 597 Antisense
ACCACAGACCCACTAAACTCATCTG 380 85 616 Antisense
TCTGATTCTGGCGCTGTTACATTCC 210 607 730 Antisense
Sequence Source Affymetrix Proprietary Database