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[190667_s_at]

Description M03F4.7 /REP_DB=WormBase Gene ID /WP=CE12368 /TR=Q23017 /GB=AAB04578.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=calcium binding protein
Cluster 6grp_highest_10_10 > 29      6grp_high1_10_10 > 81      4grp_highest_8_8 > 01      4grp_high_8_8 > 53      6grp_highest_nonorm > 36      6grp_total > 81      4grp_total > 50      6grp_highest_sub > 04_05      6grp_high1_sub > 04      6grp_total_sub > Hat      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4091
1 2 3 4 range
A 2469.5
(-1.4)
P 		4838.4
(2.9)
P 		4883.6
(3)
P 		1569
(-3)
P 		3315
B 2238.5
(-1.8)
P 		4908.8
(3)
P 		4207.3
(1.7)
P 		1564.4
(-3)
P 		3344
C 2530.9
(-1.2)
P 		5396
(3)
P 		5185.3
(2.7)
P 		1304.7
(-3)
P 		4091
avr 2413
(-1.4) 		5047.7
(3) 		4758.7
(2.5) 		1479.4
(-3) 		3568

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4620
1 2 3 4 5 6 range
A 3396.3
(-2.7)
P 		3487.7
(-2.6)
P 		3479.2
(-2.6)
P 		7156.5
(3)
P 		4246.4
(-1.4)
P 		3219.7
(-3)
P 		3937
B 3494
(-1)
P 		3008.2
(-2)
P 		3159.3
(-1.7)
P 		5470
(3)
P 		5068.9
(2.2)
P 		2536.3
(-3)
P 		2934
C 4563.2
(0.6)
P 		2852.6
(-2.6)
P 		4462.2
(0.5)
P 		5510.6
(2.4)
P 		5815.4
(3)
P 		2630.3
(-3)
P 		3185
avr 3817.8
(-1.1) 		3116.2
(-2.4) 		3700.2
(-1.3) 		6045.7
(3) 		5043.6
(1.2) 		2795.4
(-3) 		3250
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1587
1 2 3 4 range
A 899.2
(0.8)
P 		1050.3
(1.7)
P 		1276.7
(3)
P 		229.7
(-3)
P 		1047
B 713.8
(-0.4)
P 		1212.3
(3)
P 		974.9
(1.4)
P 		333.4
(-3)
P 		879
C 837.8
(-0.7)
P 		1551.4
(2)
P 		1807.3
(3)
P 		220
(-3)
P 		1587
avr 816.9
(0.1) 		1271.3
(2.6) 		1353
(3) 		261
(-3) 		1092

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1433
1 2 3 4 5 6 range
A 626.1
(-3)
P 		1240.4
(0.1)
P 		757.7
(-2.3)
P 		1815
(3)
P 		1281.4
(0.3)
P 		783.9
(-2.2)
P 		1189
B 1215.7
(-0.9)
P 		1001.3
(-1.9)
P 		767.2
(-3)
P 		1448.8
(0.2)
P 		2059.4
(3)
P 		945.8
(-2.2)
P 		1292
C 1691.4
(1.9)
P 		870.4
(-3)
P 		1135.7
(-1.4)
P 		1108.2
(-1.6)
P 		1881.8
(3)
P 		880.5
(-2.9)
P 		1011
avr 1177.7
(-0.9) 		1037.4
(-1.8) 		886.9
(-2.9) 		1457.3
(1) 		1740.9
(3) 		870.1
(-3) 		871
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 190667_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16407
Sequence Type Exemplar sequence
Representative Public ID M03F4.7 NCBI
Target Description M03F4.7 /REP_DB=WormBase Gene ID /WP=CE12368 /TR=Q23017 /GB=AAB04578.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=calcium binding protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001029635(11), NM_001029636(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001029635 NCBI Caenorhabditis elegans M03F4.7a (M03F4.7) mRNA, complete cds. 11/11 None
NM_001029636 NCBI Caenorhabditis elegans M03F4.7b (M03F4.7) mRNA, complete cds. 11/11 None
SNAP00000026192 ENSEMBL cdna:SNAP chromosome:CEL140:X:4969760:4970862:-1 11/11 None
GENEFINDER00000026200 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:4969760:4970862:-1 11/11 None
M03F4.7a.1 ENSEMBL cdna:known chromosome:CEL140:X:4969508:4970878:-1 gene:M03F4.7 11/11 None
M03F4.7a.2 ENSEMBL cdna:known chromosome:CEL140:X:4969508:4970883:-1 gene:M03F4.7 11/11 None
M03F4.7b ENSEMBL cdna:known chromosome:CEL140:X:4969521:4970862:-1 gene:M03F4.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:4969760-4970863(-) 100.0 100.0
Public Domain and Genome References
Ensembl M03F4.7
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB04578 Hypothetical protein M03F4.7a [Caenorhabditis elegans] ref|NP_001024806.1| M03F4.7a [Caenorhabditis elegans] gb|AAF34189.1| calumenin-like protein [Caenorhabditis elegans] 1.0E-180
blast CAE68672 Hypothetical protein CBG14576 [Caenorhabditis briggsae] 1.0E-176
Protein Domains
Database ID Description E-Value
Pfam IPR002048 EMBL-EBI Calcium-binding EF-hand 0.02
Pfam IPR002048 EMBL-EBI Calcium-binding EF-hand 0.012
Pfam IPR002048 EMBL-EBI Calcium-binding EF-hand 0.0094
Pfam IPR002048 EMBL-EBI Calcium-binding EF-hand 0.018
Sequence
Target Sequence 
>C. ELEGANS:190667_S_AT
tggtctacggatctgctgacggagctggccaggagctttctccagaatacgctaaaatga
tcgcacgtgacgagaagagatgggctgttgccgactacgactcaaacggagccctcgaca
gaaccgaatacggttgcttcatgcatccagaagactgtgatcacatgagagacgttgtcg
tcgccgagactgtcgatgatattgataagaacaaggacggatctgtggatcttgatgagt
acattggagatatgtatagaccagatgattacccagagttgaatggaaaagaaccagact
gggttcaatctgagcgcgaaatgttcaaggagcacagagacaaggacggagatggaaaac
tcaatcaggaggagatgcgcgattggattatgccagttggattcgaccacgccgaggctg
aggctcgtcacttggttggaatcgccgatgacaacaaagacggaaaactgaatctcgatg
aaatcgtcgcccacta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGGTCTACGGATCTGCTGACGGAGC 599 547 389 Antisense
CTGACGGAGCTGGCCAGGAGCTTTC 401 237 404 Antisense
AGGAGCTTTCTCCAGAATACGCTAA 114 57 419 Antisense
AGAGATGGGCTGTTGCCGACTACGA 271 67 464 Antisense
TCAAACGGAGCCCTCGACAGAACCG 595 629 490 Antisense
GAATACGGTTGCTTCATGCATCCAG 346 327 514 Antisense
TGAGAGACGTTGTCGTCGCCGAGAC 118 569 554 Antisense
GACTGGGTTCAATCTGAGCGCGAAA 32 377 685 Antisense
TTATGCCAGTTGGATTCGACCACGC 526 675 776 Antisense
GGCTCGTCACTTGGTTGGAATCGCC 532 537 810 Antisense
ATCTCGATGAAATCGTCGCCCACTA 243 33 860 Antisense
Sequence Source Affymetrix Proprietary Database