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[190660_at] Actin-binding protein

Description C07A9.5 /REP_DB=WormBase Gene ID /WP=CE02981 /TR=SW:P34316 /GB=CAA82343.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=Actin-binding protein
Cluster 6grp_total > 55      4grp_total > 18      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 2.4
(-0.3)
A 		1.9
(-3)
A 		2.8
(1.9)
A 		3
(3)
A 		1
B 2.4
(-1.8)
A 		8.7
(3)
A 		0.9
(-3)
A 		2.8
(-1.5)
A 		8
C 0.8
(-3)
A 		0.8
(-3)
A 		2.2
(-2.4)
A 		15.9
(3)
A 		15
avr 1.9
(-3) 		3.8
(-0.8) 		2
(-2.9) 		7.2
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 7.5
(-0.7)
A 		1.6
(-3)
A 		4
(-2.1)
A 		3.7
(-2.2)
A 		5.2
(-1.6)
A 		17
(3)
A 		15
B 2
(-2.7)
A 		2.4
(-2.5)
A 		14
(3)
A 		2.5
(-2.4)
A 		1.5
(-2.9)
A 		1.3
(-3)
A 		13
C 2.5
(0.3)
A 		1.6
(-1.2)
A 		4.1
(3)
A 		1.6
(-1.2)
A 		0.5
(-3)
A 		1.3
(-1.7)
A 		4
avr 4
(-0.7) 		1.9
(-3) 		7.4
(3) 		2.6
(-2.2) 		2.4
(-2.5) 		6.5
(2) 		6
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3
1 2 3 4 range
A 0.9
(3)
A 		0.4
(-3)
A 		0.7
(0.6)
A 		0.4
(-3)
A 		1
B 0.8
(-1.1)
A 		2.1
(3)
A 		0.2
(-3)
A 		0.6
(-1.7)
A 		2
C 0.3
(-2.8)
A 		0.2
(-3)
A 		0.8
(-1.6)
A 		2.7
(3)
A 		3
avr 0.7
(-2) 		0.9
(0) 		0.6
(-3) 		1.2
(3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4
1 2 3 4 5 6 range
A 1.4
(-1.6)
A 		0.6
(-3)
A 		0.9
(-2.5)
A 		0.9
(-2.5)
A 		1.6
(-1.3)
A 		4.1
(3)
A 		4
B 0.7
(-2.6)
A 		0.8
(-2.4)
A 		3.4
(3)
A 		0.7
(-2.6)
A 		0.6
(-2.8)
A 		0.5
(-3)
A 		3
C 0.9
(2.3)
A 		0.5
(-0.8)
A 		1
(3)
A 		0.3
(-2.3)
A 		0.2
(-3)
A 		0.4
(-1.5)
A 		1
avr 1
(-1) 		0.6
(-3) 		1.8
(3) 		0.6
(-3) 		0.8
(-2) 		1.7
(2.5) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190660_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6137
Sequence Type Exemplar sequence
Representative Public ID C07A9.5 NCBI
Target Description C07A9.5 /REP_DB=WormBase Gene ID /WP=CE02981 /TR=SW:P34316 /GB=CAA82343.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=Actin-binding protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066739(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066739 NCBI Caenorhabditis elegans C07A9.5 (C07A9.5) mRNA, complete cds. 11/11 A 
GENEFINDER00000039340 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:9670798:9683204:-1 11/11 None
SNAP00000039324 ENSEMBL cdna:SNAP chromosome:CEL140:III:9681420:9682725:-1 11/11 None
C07A9.5 ENSEMBL cdna:known chromosome:CEL140:III:9681420:9682725:-1 gene:C07A9.5 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:9681415-9682721(-) 99.07 100.0
Public Domain and Genome References
Gene Title Actin-binding protein
Ensembl C07A9.5
Entrez Gene 182355 Entrez gene
SwissProt P34316 EMBL-EBI
WormBase CE02981 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5509 calcium ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA82343 Hypothetical protein C07A9.5 [Caenorhabditis elegans] ref|NP_499140.1| C07A9.5 [Caenorhabditis elegans] sp|P34316|YKT5_CAEEL Hypothetical protein C07A9.5 in chromosome III 0.0
blast CAA82344 Hypothetical protein C07A9.6 [Caenorhabditis elegans] ref|NP_001021158.1| C07A9.6 [Caenorhabditis elegans] sp|P34317|YKT6_CAEEL Hypothetical protein C07A9.6 in chromosome III precursor 0.0
blast CAE65154 Hypothetical protein CBG10022 [Caenorhabditis briggsae] 0.0
blast CAA82343 Hypothetical protein C07A9.5 [Caenorhabditis elegans] ref|NP_499140.1| C07A9.5 [Caenorhabditis elegans] sp|P34316|YKT5_CAEEL Hypothetical protein C07A9.5 in chromosome III 1.0E-159
blast AAA27974 Hypothetical protein C50C3.2 [Caenorhabditis elegans] ref|NP_498787.1| C50C3.2 [Caenorhabditis elegans] sp|P34367|YLJ2_CAEEL Hypothetical protein C50C3.2 in chromosome III 1.0E-141
blast S44621 C50C3.2 protein - Caenorhabditis elegans 1.0E-122
Protein Domains
Database ID Description E-Value
Pfam IPR002048 EMBL-EBI Calcium-binding EF-hand 0.0012
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 6.2E-31
Pfam IPR002048 EMBL-EBI Calcium-binding EF-hand 0.0012
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000039340 1 13-35
Sequence
Target Sequence 
>C. ELEGANS:190660_AT
aagagccttatgaatctgattgctaaggtacagaaaagtggaatgattcaagatctggaa
aagtggagaagtcttatggaatctcgttacatcttcgataacacattttcttctgccaca
ccacatggagttcttgtcgaaatgtgtcaatgtcttgagctgatgagttcaatgttgcga
tctgtggagcaatcaattgcagatagaaatcacaacggagtcactgagaaacagcttcac
gagtttaaattagcctttgattatttcgatcaagaaaagaatggatggctagactatgag
cacttcgagttgtgcctcaaatctcaaggatataacttttcagttgaaagtactctcaaa
gagacgatgtccctcttggatccatctacgtatgaaaagcatgactacatgcgttatatg
gtgaagcatgagacaacaaacattcttgacgatcattcagccattgaagatgctttgaag
aacctggatgcaaggaagatttcggatagtatgtctcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGAGCCTTATGAATCTGATTGCTA 64 155 469 Antisense
TCTCGTTACATCTTCGATAACACAT 602 611 550 Antisense
CGATAACACATTTTCTTCTGCCACA 204 249 564 Antisense
GGATGGCTAGACTATGAGCACTTCG 604 513 751 Antisense
ATGAGCACTTCGAGTTGTGCCTCAA 528 45 764 Antisense
CACTTCGAGTTGTGCCTCAAATCTC 189 197 769 Antisense
CTTTTCAGTTGAAAGTACTCTCAAA 310 221 804 Antisense
CCTCTTGGATCCATCTACGTATGAA 126 269 840 Antisense
GGATCCATCTACGTATGAAAAGCAT 489 513 846 Antisense
AACCTGGATGCAAGGAAGATTTCGG 341 147 949 Antisense
GGAAGATTTCGGATAGTATGTCTCG 389 531 962 Antisense
Sequence Source Affymetrix Proprietary Database