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[190656_at]

Description F47E1.2 /REP_DB=WormBase Gene ID /WP=CE28397 /TR=Q20538 /GB=AAK72059.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=DNA binding protein F-G
Cluster 6grp_total > 93      4grp_total > 11      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 144
1 2 3 4 range
A 28.3
(-3)
A 		34
(-2.6)
A 		28.3
(-3)
A 		118.2
(3)
P 		90
B 62.2
(1.1)
A 		49.6
(0.1)
A 		9.7
(-3)
A 		86.5
(3)
P 		77
C 36.6
(-3)
A 		59.5
(-1.8)
A 		38.2
(-2.9)
A 		153.2
(3)
P 		117
avr 42.4
(-1.9) 		47.7
(-1.6) 		25.4
(-3) 		119.3
(3) 		94

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 93
1 2 3 4 5 6 range
A 72
(1.7)
A 		60.1
(0.8)
A 		54.8
(0.4)
A 		9.6
(-3)
A 		89.3
(3)
P 		65.1
(1.2)
A 		80
B 32.5
(-3)
A 		47.1
(-0.9)
A 		48.7
(-0.7)
A 		33.5
(-2.9)
A 		74.7
(3)
P 		39.7
(-2)
P 		42
C 54.8
(-0.1)
A 		88
(2.1)
A 		10.4
(-3)
A 		47.7
(-0.6)
A 		102.3
(3)
A 		68.7
(0.8)
P 		92
avr 53.1
(-0.7) 		65.1
(0.6) 		38
(-2.2) 		30.3
(-3) 		88.8
(3) 		57.8
(-0.2) 		59
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 24
1 2 3 4 range
A 10.3
(-1.2)
A 		7.4
(-3)
A 		7.4
(-3)
A 		17.3
(3)
P 		10
B 19.8
(3)
A 		12.2
(0.4)
A 		2.2
(-3)
A 		18.4
(2.5)
P 		18
C 12.1
(-3)
A 		17.1
(-0.8)
A 		13.3
(-2.5)
A 		25.8
(3)
P 		14
avr 14.1
(0) 		12.2
(-0.9) 		7.6
(-3) 		20.5
(3) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 31
1 2 3 4 5 6 range
A 13.3
(-0.3)
A 		21.4
(1.7)
A 		11.9
(-0.7)
A 		2.4
(-3)
A 		26.9
(3)
P 		15.8
(0.3)
A 		25
B 11.3
(-2.3)
A 		15.7
(-1.1)
A 		11.8
(-2.2)
A 		8.9
(-3)
A 		30.3
(3)
P 		14.8
(-1.3)
P 		21
C 20.3
(0.5)
A 		26.9
(1.8)
A 		2.6
(-3)
A 		9.6
(-1.6)
A 		33.1
(3)
A 		23
(1)
P 		31
avr 15
(-0.9) 		21.3
(0.7) 		8.8
(-2.5) 		7
(-3) 		30.1
(3) 		17.9
(-0.2) 		23
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190656_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16739
Sequence Type Exemplar sequence
Representative Public ID F47E1.2 NCBI
Target Description F47E1.2 /REP_DB=WormBase Gene ID /WP=CE28397 /TR=Q20538 /GB=AAK72059.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=DNA binding protein F-G
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077131(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077131 NCBI Caenorhabditis elegans F47E1.4 (F47E1.4) mRNA, complete cds. 11/11 None
GENEFINDER00000035135 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:9062779:9066335:1 11/11 None
SNAP00000035129 ENSEMBL cdna:SNAP chromosome:CEL140:X:9063314:9066335:1 11/11 None
F47E1.4.1 ENSEMBL cdna:known chromosome:CEL140:X:9062718:9066526:1 gene:F47E1.4 11/11 None
F47E1.4.2 ENSEMBL cdna:known chromosome:CEL140:X:9062769:9066433:1 gene:F47E1.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:9057593-9066334(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F47E1.4
Entrez Gene 181146 Entrez gene
SwissProt Q95ZT3 EMBL-EBI
WormBase CE28398 Wormbase
Functional Annotations
Ortholog
ID Title Organism
DROSOPHILA_2:1625041_AT Organic anion transporting polypeptide 74D dm
DROSGENOME1:151806_AT Organic anion transporting polypeptide 74D dm
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6810 transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5215 transporter activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK72060 Hypothetical protein F47E1.4 [Caenorhabditis elegans] ref|NP_509532.1| F47E1.4 [Caenorhabditis elegans] 0.0
blast T16388 hypothetical protein F47E1.2 - Caenorhabditis elegans 0.0
blast AAK72059 Hypothetical protein F47E1.2 [Caenorhabditis elegans] ref|NP_509531.1| F47E1.2 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR004157 EMBL-EBI Organic anion transporter polypeptide (OATP), C-terminal 2.5E-19
Pfam IPR004157 EMBL-EBI Organic anion transporter polypeptide (OATP), C-terminal 1.8E-74
Pfam IPR004157 EMBL-EBI Organic anion transporter polypeptide (OATP), C-terminal 2.3E-70
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_509532.1 10 7-29,44-66,73-95,259-281,293-315,341-363,409-431,446-468,594-616,631-653
F47E1.4.1 10 7-29,44-66,73-95,259-281,293-315,341-363,409-431,446-468,594-616,631-653
F47E1.4.2 10 7-29,44-66,73-95,259-281,293-315,341-363,409-431,446-468,594-616,631-653
GENEFINDER00000035135 10 7-29,44-66,73-95,259-281,293-315,341-363,409-431,446-468,594-616,631-653
SNAP00000035129 7 145-167,179-201,227-249,295-317,332-354,423-445,460-482
Sequence
Target Sequence 
>C. ELEGANS:190656_AT
tcaatttggatctgaccccgttatcggtttcgcatcatgtgaatgtgttgaaagtggtgt
cgtgagcaaaagcttttgtcagaacaaatgtcaattcagttccattctgtttttggcaac
tgttcttctagggtcttttgtggcgggtgtagcggtcgttccagatatgctgattctgtt
aagatcagttgatgttgggagtcgttcactgtctatgggtcttcagggaatggcaatttc
acttttcggtactctcccatcgtccattatttggggattagtcatcgataccgcttgtcg
tgtatgggataagacatgcaacggggccaatgggtcatgctcaatttatgattccgatca
ccttcgaatctggatgcatttgttgtatgtgggagttcgttttatctccctactcagtga
tat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCAATTTGGATCTGACCCCGTTATC 448 633 3855 Antisense
CCCGTTATCGGTTTCGCATCATGTG 221 261 3871 Antisense
GCAACTGTTCTTCTAGGGTCTTTTG 19 321 3970 Antisense
GTAGCGGTCGTTCCAGATATGCTGA 487 457 4003 Antisense
GATGTTGGGAGTCGTTCACTGTCTA 152 409 4045 Antisense
TGGCAATTTCACTTTTCGGTACTCT 342 545 4085 Antisense
ACTCTCCCATCGTCCATTATTTGGG 673 99 4105 Antisense
TAGTCATCGATACCGCTTGTCGTGT 446 651 4133 Antisense
GCAACGGGGCCAATGGGTCATGCTC 428 319 4172 Antisense
TTCCGATCACCTTCGAATCTGGATG 175 699 4206 Antisense
GTTTTATCTCCCTACTCAGTGATAT 588 447 4253 Antisense
Sequence Source Affymetrix Proprietary Database