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[190654_at] serine/threonine kinase

Description T01H10.4 /REP_DB=WormBase Gene ID /WP=CE18917 /TR=Q22082 /GB=CAA91542.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=serine-threonine kinase
Cluster 6grp_total > 91      4grp_total > 13      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 71
1 2 3 4 range
A 24.2
(1.1)
A 		5.4
(-2.8)
A 		4.6
(-3)
A 		33.1
(3)
A 		29
B 14.1
(3)
A 		4.2
(-3)
A 		5.3
(-2.3)
A 		9.4
(0.2)
A 		10
C 32.5
(-0.7)
A 		6
(-3)
A 		6.6
(-2.9)
A 		75.4
(3)
M 		69
avr 23.6
(0.2) 		5.2
(-3) 		5.5
(-2.9) 		39.3
(3) 		34

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 29
1 2 3 4 5 6 range
A 11
(-1.5)
A 		4.9
(-2.9)
A 		4.3
(-3)
A 		8.4
(-2.1)
A 		31.8
(3)
A 		4.7
(-2.9)
A 		28
B 21.9
(2.1)
A 		4
(-2.8)
A 		4.6
(-2.6)
A 		25
(3)
A 		4.6
(-2.6)
A 		3.2
(-3)
A 		22
C 2.8
(-3)
A 		6.8
(3)
A 		4
(-1.2)
A 		2.9
(-2.9)
A 		5.1
(0.5)
A 		4.8
(0)
A 		4
avr 11.9
(1.8) 		5.2
(-2.4) 		4.3
(-2.9) 		12.1
(1.9) 		13.8
(3) 		4.2
(-3) 		10
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 8.8
(3)
A 		1.2
(-3)
A 		1.2
(-3)
A 		4.9
(-0.1)
A 		8
B 4.5
(3)
A 		1
(-3)
A 		1.2
(-2.7)
A 		2
(-1.3)
A 		4
C 10.7
(1.9)
A 		1.7
(-3)
A 		2.3
(-2.7)
A 		12.7
(3)
M 		11
avr 8
(3) 		1.3
(-3) 		1.6
(-2.7) 		6.5
(1.7) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 2
(-2.2)
A 		1.8
(-2.4)
A 		0.9
(-3)
A 		2.1
(-2.2)
A 		9.6
(3)
A 		1.1
(-2.9)
A 		9
B 7.6
(3)
A 		1.3
(-2.8)
A 		1.1
(-3)
A 		6.6
(2.1)
A 		1.9
(-2.3)
A 		1.2
(-2.9)
A 		7
C 1.1
(-1)
A 		2.1
(3)
A 		1
(-1.4)
A 		0.6
(-3)
A 		1.6
(1)
A 		1.6
(1)
A 		2
avr 3.6
(1.6) 		1.7
(-1.8) 		1
(-3) 		3.1
(0.7) 		4.4
(3) 		1.3
(-2.5) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190654_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16774
Sequence Type Exemplar sequence
Representative Public ID T01H10.4 NCBI
Target Description T01H10.4 /REP_DB=WormBase Gene ID /WP=CE18917 /TR=Q22082 /GB=CAA91542.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=serine-threonine kinase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077625(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077625 NCBI Caenorhabditis elegans T01H10.4 (T01H10.4) mRNA, complete cds. 11/11 None
T01H10.4 ENSEMBL cdna:known chromosome:CEL140:X:12116536:12117684:-1 gene:T01H10.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000038731 7/11 Cross Hyb Matching Probes None
SNAP00000038723 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:12116535-12117684(-) 100.0 100.0
Public Domain and Genome References
Gene Title serine/threonine kinase
Ensembl T01H10.4
Entrez Gene 187974 Entrez gene
SwissProt Q22082 EMBL-EBI
WormBase CE18917 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6468 protein amino acid phosphorylation inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4672 protein kinase activity inferred from electronic annotation QuickGO AmiGO
4674 protein serine/threonine kinase activity inferred from electronic annotation QuickGO AmiGO
4713 protein-tyrosine kinase activity inferred from electronic annotation QuickGO AmiGO
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA91542 Hypothetical protein T01H10.4 [Caenorhabditis elegans] ref|NP_510026.1| T01H10.4 [Caenorhabditis elegans] 1.0E-163
blast CAA88975 Hypothetical protein ZC373.3 [Caenorhabditis elegans] ref|NP_509688.1| ZC373.3 [Caenorhabditis elegans] 4.0E-51
blast CAE69889 Hypothetical protein CBG16237 [Caenorhabditis briggsae] 7.0E-41
Protein Domains
Database ID Description E-Value
Pfam IPR000719 EMBL-EBI Protein kinase 3.9E-18
Sequence
Target Sequence 
>C. ELEGANS:190654_AT
gctccatcatttcactcacgtaggatggaattgcatcgttctctctttggagggaccgag
tttgtcagatgtggttgctcgcaacaacaataagccgttgtcgacagagaacgtgctccg
tattgcgtggaaattgggatcgactttgtctgaaatccataatgctggcttcattcatag
ggacgtacacagccaaaatgttctgcttacccttgaaaagaagttggcaccacagaagga
ggactatcagtttcatcgttgtgtacattctagcctgtcagtcatgaagggaaatccgca
cacttgtagagatgactggatttcgctaatttatttatgtgttgaactgcatggcaaaaa
cttgggcggtagcctaactgaaatgtacgatgcaaaaatggaatttcattcgaacagaga
ctggctttatatcggtaaccgcaaatggacttatgagctgtacaatgtgatcatgaactg
gatgaccgaagatactcttgataatcaggaaattcttcgtttcctgagaaaatctattgt
tcgatttgactgtaactcaccaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCTCCATCATTTCACTCACGTAGGA 574 297 246 Antisense
TGCATCGTTCTCTCTTTGGAGGGAC 597 569 277 Antisense
AGTTTGTCAGATGTGGTTGCTCGCA 238 63 304 Antisense
AGAACGTGCTCCGTATTGCGTGGAA 592 73 353 Antisense
GCTGGCTTCATTCATAGGGACGTAC 147 293 409 Antisense
AGCCAAAATGTTCTGCTTACCCTTG 416 83 436 Antisense
GGACTATCAGTTTCATCGTTGTGTA 285 525 486 Antisense
TACATTCTAGCCTGTCAGTCATGAA 113 643 509 Antisense
GAAGGGAAATCCGCACACTTGTAGA 377 333 531 Antisense
GACTGGCTTTATATCGGTAACCGCA 90 287 664 Antisense
GTTCGATTTGACTGTAACTCACCAA 215 441 784 Antisense
Sequence Source Affymetrix Proprietary Database