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[190652_at] Ribosomal protein L3

Description C26E6.6 /REP_DB=WormBase Gene ID /WP=CE26871 /TR=SW:P49404 /GB=AAA21160.2 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation /DEF=Ribosomal protein L3
Cluster 6grp_highest_10_10 > 45      6grp_high1_10_10 > 54      4grp_highest_8_8 > 11      4grp_high_8_8 > 55      6grp_highest_nonorm > 76      6grp_total > 44      4grp_total > 48      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 668
1 2 3 4 range
A 1400.5
(-3)
P 		1497.4
(-1.7)
P 		1843.6
(3)
P 		1445.7
(-2.4)
P 		443
B 1253.2
(-3)
P 		1737.1
(1.7)
P 		1865.2
(3)
P 		1443.2
(-1.1)
P 		612
C 1417.8
(-2.9)
P 		1921
(3)
P 		1862.3
(2.3)
P 		1405.8
(-3)
P 		515
avr 1357.2
(-3) 		1718.5
(1.3) 		1857
(3) 		1431.6
(-2.1) 		500

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 612
1 2 3 4 5 6 range
A 1162.3
(0.8)
P 		1233.2
(2.9)
P 		1182.7
(1.4)
P 		1236
(3)
P 		1032.1
(-3)
P 		1167.6
(1)
P 		204
B 1257
(-0.3)
P 		1309.6
(0.5)
P 		1476.5
(3)
P 		1165.8
(-1.7)
P 		1142.6
(-2.1)
P 		1082.7
(-3)
P 		394
C 1061.6
(-0.2)
P 		1284.3
(3)
P 		1280.1
(2.9)
P 		963.1
(-1.6)
P 		864.1
(-3)
P 		1140.5
(0.9)
P 		420
avr 1160.3
(-0.1) 		1275.7
(2.3) 		1313.1
(3) 		1121.6
(-0.8) 		1012.9
(-3) 		1130.3
(-0.7) 		300
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 438
1 2 3 4 range
A 509.9
(3)
P 		325
(-0.7)
P 		481.9
(2.4)
P 		211.6
(-3)
P 		298
B 399.6
(1.4)
P 		429
(2.8)
P 		432.2
(3)
P 		307.6
(-3)
P 		125
C 469.3
(0.4)
P 		552.3
(1.6)
P 		649.1
(3)
P 		237
(-3)
P 		412
avr 459.6
(1.6) 		435.4
(1.1) 		521.1
(3) 		252.1
(-3) 		269

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 271
1 2 3 4 5 6 range
A 214.3
(-3)
P 		438.6
(3)
P 		257.6
(-1.8)
P 		313.5
(-0.3)
P 		311.5
(-0.4)
P 		284.3
(-1.1)
P 		224
B 437.4
(2)
P 		435.9
(1.9)
P 		358.5
(-1.1)
P 		308.8
(-3)
P 		464.2
(3)
P 		403.7
(0.7)
P 		155
C 393.5
(3)
P 		391.9
(3)
P 		325.8
(1)
P 		193.7
(-3)
P 		279.6
(-0.4)
P 		381.8
(2.6)
P 		200
avr 348.4
(0.1) 		422.1
(3) 		314
(-1.3) 		272
(-3) 		351.8
(0.2) 		356.6
(0.4) 		150
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190652_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8007
Sequence Type Exemplar sequence
Representative Public ID C26E6.6 NCBI
Target Description C26E6.6 /REP_DB=WormBase Gene ID /WP=CE26871 /TR=SW:P49404 /GB=AAA21160.2 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation /DEF=Ribosomal protein L3
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065644(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065644 NCBI Caenorhabditis elegans C26E6.6 (C26E6.6) mRNA, complete cds. 11/11 None
SNAP00000014701 ENSEMBL cdna:SNAP chromosome:CEL140:III:4935539:4937031:1 11/11 None
GENEFINDER00000014709 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:4935539:4937031:1 11/11 None
C26E6.6.2 ENSEMBL cdna:known chromosome:CEL140:III:4935538:4937166:1 gene:C26E6.6 11/11 None
C26E6.6.1 ENSEMBL cdna:known chromosome:CEL140:III:4935539:4937166:1 gene:C26E6.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:4935585-4937031(+) 100.0 100.0
Public Domain and Genome References
Gene Title Ribosomal protein L3
Ensembl C26E6.6
Entrez Gene 175666 Entrez gene
SwissProt P49404 EMBL-EBI
WormBase CE26871 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:258404_AT ribosomal protein L3 family protein at
CANINE:1587478_AT similar to Mitochondrial 39S ribosomal protein L3 (L3mt) (MRP-L3) cfa
CANINE_2:CFA.10585.1.A1_AT similar to Mitochondrial 39S ribosomal protein L3 (L3mt) (MRP-L3) cfa
CANINE_2:CFAAFFX.10183.1.S1_AT similar to Mitochondrial 39S ribosomal protein L3 (L3mt) (MRP-L3) cfa
CANINE_2:CFAAFFX.10183.1.S1_S_AT similar to Mitochondrial 39S ribosomal protein L3 (L3mt) (MRP-L3) cfa
DROSOPHILA_2:1633486_AT mitochondrial ribosomal protein L3 dm
DROSGENOME1:145151_AT mitochondrial ribosomal protein L3 dm
CHICKEN:GGAAFFX.11791.1.S1_S_AT mitochondrial ribosomal protein L3 gga
HG-U133_PLUS_2:208787_AT mitochondrial ribosomal protein L3 hs
HG-U133A:208787_AT mitochondrial ribosomal protein L3 hs
HG-FOCUS:208787_AT mitochondrial ribosomal protein L3 hs
HG-U133A_2:208787_AT mitochondrial ribosomal protein L3 hs
HU35KSUBD:RC_H73466_S_AT mitochondrial ribosomal protein L3 hs
HUGENEFL:X06323_AT mitochondrial ribosomal protein L3 hs
U133_X3P:G13097224_3P_AT mitochondrial ribosomal protein L3 hs
HG-U95AV2:37726_AT mitochondrial ribosomal protein L3 hs
HG-U133_PLUS_2:238822_AT Mitochondrial ribosomal protein L3 hs
HG-U133B:238822_AT Mitochondrial ribosomal protein L3 hs
HG-U95C:61008_R_AT Mitochondrial ribosomal protein L3 hs
HG-U95D:69673_AT Mitochondrial ribosomal protein L3 hs
HU35KSUBD:RC_AA189116_AT Mitochondrial ribosomal protein L3 hs
U133_X3P:HS.96168.0.A1_3P_AT Mitochondrial ribosomal protein L3 hs
MOUSE430_2:1431006_AT mitochondrial ribosomal protein L3 mm
MOE430A:1431006_AT mitochondrial ribosomal protein L3 mm
MOUSE430A_2:1431006_AT mitochondrial ribosomal protein L3 mm
MU11KSUBA:AA103292_S_AT mitochondrial ribosomal protein L3 mm
MOE430A:1422464_AT mitochondrial ribosomal protein L3 mm
MOUSE430A_2:1422464_AT mitochondrial ribosomal protein L3 mm
MOUSE430_2:1422464_AT mitochondrial ribosomal protein L3 mm
MOE430A:1422463_A_AT mitochondrial ribosomal protein L3 mm
MOUSE430A_2:1422463_A_AT mitochondrial ribosomal protein L3 mm
MOUSE430_2:1422463_A_AT mitochondrial ribosomal protein L3 mm
MG-U74AV2:95734_AT Mitochondrial ribosomal protein L3, mRNA (cDNA clone MGC:41297 IMAGE:1547459) mm
MU19KSUBA:TC16803_AT Mitochondrial ribosomal protein L3, mRNA (cDNA clone MGC:41297 IMAGE:1547459) mm
MU19KSUBA:TC22495_AT Mitochondrial ribosomal protein L3, mRNA (cDNA clone MGC:41297 IMAGE:1547459) mm
RG-U34A:RC_AA800272_AT mitochondrial ribosomal protein L3 (predicted) rn
RAE230A:1371709_AT mitochondrial ribosomal protein L3 (predicted) rn
RAT230_2:1371709_AT mitochondrial ribosomal protein L3 (predicted) rn
YEAST_2:1775644_AT Mitochondrial ribosomal protein of the large subunit Sc
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6412 protein biosynthesis inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5622 intracellular inferred from electronic annotation QuickGO AmiGO
5840 ribosome inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3735 structural constituent of ribosome inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA21160 Hypothetical protein C26E6.6 [Caenorhabditis elegans] ref|NP_498045.1| C26E6.6 [Caenorhabditis elegans] sp|P49404|RM03_CAEEL Putative mitochondrial 39S ribosomal protein L3 0.0
blast C88445 protein C26E6.6 [imported] - Caenorhabditis elegans 1.0E-180
Protein Domains
Database ID Description E-Value
Pfam IPR000597 EMBL-EBI Ribosomal protein L3 5.3E-34
Pfam IPR000597 EMBL-EBI Ribosomal protein L3 5.3E-34
Sequence
Target Sequence 
>C. ELEGANS:190652_AT
tcctggtaacagaagacgctctccccagtgctggacagccacttgatgcccgtcacttcg
gagttggtcaatatgtaactgctactggaaaaactattgactggggattccagggtggaa
tgcatcgatggggaatgcgtggacaaccgacaagacgtaccacaaaatcacatcgtagaa
ttggttccgttggttcagtcggcgatgctcgaatttggccaggaaaacgtatgccgggac
atatgggttatgagtggaggactgtttctggtttggaaattgttcgaatcaatgtagata
aacaagtaatttatgtgaaaggaagtgtacctggtgatattggagaaacaattctactta
aagattgcttacaagaagaaaaacgtctgaaatccggcccaatgccaacatgggctccat
cactagaaaccatcgaagaagaaccggagacagaacccgaagaaggcacaattcccaaaa
atcttcttttcaacgaaaaattctcgcccaaactgttccgtttcacatctccatccattt
tattcactgatgccgacgccaagaagg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCCTGGTAACAGAAGACGCTCTCCC 504 593 536 Antisense
TCCCCAGTGCTGGACAGCCACTTGA 149 597 557 Antisense
ATGCCCGTCACTTCGGAGTTGGTCA 425 41 581 Antisense
GGACAACCGACAAGACGTACCACAA 454 525 676 Antisense
TGGTTCCGTTGGTTCAGTCGGCGAT 186 507 717 Antisense
GTCGGCGATGCTCGAATTTGGCCAG 216 471 733 Antisense
GAGTGGAGGACTGTTTCTGGTTTGG 629 221 787 Antisense
TGAAATCCGGCCCAATGCCAACATG 117 571 923 Antisense
TGGGCTCCATCACTAGAAACCATCG 195 555 946 Antisense
ACATCTCCATCCATTTTATTCACTG 492 105 1060 Antisense
TTCACTGATGCCGACGCCAAGAAGG 591 685 1078 Antisense
Sequence Source Affymetrix Proprietary Database