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[190651_at] UDP-glucosyltransferase

Description F39G3.1 /REP_DB=WormBase Gene ID /WP=CE10112 /TR=O16276 /GB=AAB65327.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=UDP-glucosyltransferase
Cluster 6grp_highest_10_10 > 12      6grp_high1_10_10 > 20      4grp_high_8_8 > 49      6grp_highest_nonorm > 81      6grp_total > 34      4grp_total > 62      6grp_cgc > 35      6grp_cgc_sub > Cu      6grp_total_sub > Decrease      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 291
1 2 3 4 range
A 353.7
(3)
P 		267.4
(0.9)
P 		243.4
(0.3)
P 		104.4
(-3)
A 		249
B 362.4
(3)
P 		237.9
(-0.2)
P 		271.1
(0.7)
P 		126.4
(-3)
P 		236
C 395
(3)
P 		261.6
(0)
P 		253.3
(-0.2)
P 		125.2
(-3)
P 		270
avr 370.4
(3) 		255.6
(0.3) 		255.9
(0.3) 		118.7
(-3) 		252

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 288
1 2 3 4 5 6 range
A 354.4
(3)
P 		283.9
(0.4)
P 		300.4
(1)
P 		300.9
(1.1)
P 		189.4
(-3)
P 		243.6
(-1)
P 		165
B 388.1
(3)
P 		258.2
(-1.1)
P 		249.3
(-1.4)
P 		257.8
(-1.1)
P 		198.3
(-3)
P 		272.1
(-0.7)
P 		190
C 259.2
(-0.4)
P 		240.9
(-0.8)
P 		421.8
(3)
P 		238.7
(-0.8)
P 		134.2
(-3)
P 		278.8
(0)
P 		288
avr 333.9
(3) 		261
(0.3) 		323.8
(2.6) 		265.8
(0.4) 		174
(-3) 		264.8
(0.4) 		160
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 115
1 2 3 4 range
A 128.8
(3)
P 		58
(-0.7)
P 		63.6
(-0.4)
P 		15.3
(-3)
A 		114
B 115.6
(3)
P 		58.8
(-0.8)
P 		62.8
(-0.6)
P 		26.9
(-3)
P 		89
C 130.7
(3)
P 		75.2
(-0)
P 		88.3
(0.7)
P 		21.1
(-3)
P 		110
avr 125
(3) 		64
(-0.5) 		71.6
(-0.1) 		21.1
(-3) 		104

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 92
1 2 3 4 5 6 range
A 65.3
(-1.9)
P 		101
(3)
P 		65.4
(-1.9)
P 		76.3
(-0.4)
P 		57.1
(-3)
P 		59.3
(-2.7)
P 		44
B 135
(3)
P 		85.9
(-1)
P 		60.5
(-3)
P 		68.3
(-2.4)
P 		80.6
(-1.4)
P 		101.5
(0.3)
P 		75
C 96.1
(1.9)
P 		73.5
(-0.2)
P 		107.4
(3)
P 		48
(-2.6)
P 		43.4
(-3)
P 		93.3
(1.7)
P 		64
avr 98.8
(3) 		86.8
(1.1) 		77.8
(-0.3) 		64.2
(-2.4) 		60.4
(-3) 		84.7
(0.8) 		38
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190651_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15109
Sequence Type Exemplar sequence
Representative Public ID F39G3.1 NCBI
Target Description F39G3.1 /REP_DB=WormBase Gene ID /WP=CE10112 /TR=O16276 /GB=AAB65327.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=UDP-glucosyltransferase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071873(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071873 NCBI Caenorhabditis elegans F39G3.1 (UDP-glucosyltransferase) mRNA, complete cds. 11/11 None
SNAP00000018224 ENSEMBL cdna:SNAP chromosome:CEL140:V:4742954:4745116:1 11/11 None
GENEFINDER00000018243 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:4742827:4745541:1 9/11 None
F39G3.1 ENSEMBL cdna:known chromosome:CEL140:V:4742241:4745192:1 gene:F39G3.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:4742333-4745116(+) 100.0 100.0
Public Domain and Genome References
Gene Title UDP-glucosyltransferase
Gene Symbol ugt-61
Ensembl F39G3.1
Entrez Gene 185500 Entrez gene
SwissProt O16276 EMBL-EBI
WormBase CE30782 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1599307_AT UDP glucuronosyltransferase 2 family, polypeptide B15 cfa
CANINE_2:CFAAFFX.22085.1.S1_S_AT UDP glucuronosyltransferase 2 family, polypeptide B15 cfa
CANINE_2:CFAAFFX.5156.1.S1_S_AT UDP glucuronosyltransferase 2 family, polypeptide B15 cfa
CANINE:1599307_AT similar to UDP-glucuronosyltransferase 2B15 precursor (UDPGT) (UDPGTh-3) (HLUG4) cfa
CANINE_2:CFAAFFX.22085.1.S1_S_AT similar to UDP-glucuronosyltransferase 2B15 precursor (UDPGT) (UDPGTh-3) (HLUG4) cfa
CANINE_2:CFAAFFX.5156.1.S1_S_AT similar to UDP-glucuronosyltransferase 2B15 precursor (UDPGT) (UDPGTh-3) (HLUG4) cfa
CANINE:1599307_AT similar to UDP-glucuronosyltransferase 2B4 precursor (UDPGT) (Hyodeoxycholic acid) (HLUG25) (UDPGTh-1) cfa
CANINE:1584947_AT similar to UDP-glucuronosyltransferase 2B4 precursor (UDPGT) (Hyodeoxycholic acid) (HLUG25) (UDPGTh-1) cfa
CANINE_2:CFA.4508.1.A1_AT similar to UDP-glucuronosyltransferase 2B4 precursor (UDPGT) (Hyodeoxycholic acid) (HLUG25) (UDPGTh-1) cfa
CANINE_2:CFAAFFX.22085.1.S1_S_AT similar to UDP-glucuronosyltransferase 2B4 precursor (UDPGT) (Hyodeoxycholic acid) (HLUG25) (UDPGTh-1) cfa
CANINE_2:CFAAFFX.5156.1.S1_S_AT similar to UDP-glucuronosyltransferase 2B4 precursor (UDPGT) (Hyodeoxycholic acid) (HLUG25) (UDPGTh-1) cfa
DROSOPHILA_2:1626970_AT UDP-glycosyltransferase 35b dm
DROSGENOME1:142271_AT UDP-glycosyltransferase 35b dm
HG-U133_PLUS_2:207392_X_AT UDP glucuronosyltransferase 2 family, polypeptide B15 hs
HG-U133A:207392_X_AT UDP glucuronosyltransferase 2 family, polypeptide B15 hs
HG-U133A_2:207392_X_AT UDP glucuronosyltransferase 2 family, polypeptide B15 hs
HU35KSUBA:U06641_S_AT UDP glucuronosyltransferase 2 family, polypeptide B15 hs
HUGENEFL:U08854_S_AT UDP glucuronosyltransferase 2 family, polypeptide B15 hs
U133_X3P:G4507818_3P_X_AT UDP glucuronosyltransferase 2 family, polypeptide B15 hs
U133_X3P:HS.150207.1.S1_3P_X_AT UDP glucuronosyltransferase 2 family, polypeptide B15 hs
HG-U133A_2:216687_X_AT UDP glucuronosyltransferase 2 family, polypeptide B15 hs
HG-U133_PLUS_2:216687_X_AT UDP glucuronosyltransferase 2 family, polypeptide B15 hs
HG-U133A:216687_X_AT UDP glucuronosyltransferase 2 family, polypeptide B15 hs
HG-U95AV2:33068_F_AT UDP glucuronosyltransferase 2 family, polypeptide B15 hs
HG-U95AV2:33069_F_AT UDP glucuronosyltransferase 2 family, polypeptide B15 hs
HG-U95C:63915_F_AT UDP glucuronosyltransferase 2 family, polypeptide B15 hs
HG-U95C:63916_R_AT UDP glucuronosyltransferase 2 family, polypeptide B15 hs
HG-U133_PLUS_2:217175_AT UDP glucuronosyltransferase 2 family, polypeptide B15 hs
HG-U133A_2:217175_AT UDP glucuronosyltransferase 2 family, polypeptide B15 hs
HG-FOCUS:217175_AT UDP glucuronosyltransferase 2 family, polypeptide B15 hs
HG-U133A:217175_AT UDP glucuronosyltransferase 2 family, polypeptide B15 hs
HG-U133_PLUS_2:207245_AT UDP glucuronosyltransferase 2 family, polypeptide B17 hs
HG-U133A:207245_AT UDP glucuronosyltransferase 2 family, polypeptide B17 hs
HG-FOCUS:207245_AT UDP glucuronosyltransferase 2 family, polypeptide B17 hs
HG-U133A_2:207245_AT UDP glucuronosyltransferase 2 family, polypeptide B17 hs
U133_X3P:G4507820_3P_AT UDP glucuronosyltransferase 2 family, polypeptide B17 hs
HG-U95AV2:33672_F_AT UDP glucuronosyltransferase 2 family, polypeptide B17 hs
HG-U95AV2:33673_R_AT UDP glucuronosyltransferase 2 family, polypeptide B17 hs
MOUSE430_2:1424934_AT UDP glucuronosyltransferase 2 family, polypeptide B1 mm
MOE430A:1424934_AT UDP glucuronosyltransferase 2 family, polypeptide B1 mm
MOUSE430A_2:1424934_AT UDP glucuronosyltransferase 2 family, polypeptide B1 mm
MG-U74BV2:114936_AT UDP glucuronosyltransferase 2 family, polypeptide B1 mm
RAE230A:1370698_AT liver UDP-glucuronosyltransferase, phenobarbital-inducible form rn
RAT230_2:1370698_AT liver UDP-glucuronosyltransferase, phenobarbital-inducible form rn
RT-U34:M13506_AT liver UDP-glucuronosyltransferase, phenobarbital-inducible form rn
RG-U34A:M13506_AT liver UDP-glucuronosyltransferase, phenobarbital-inducible form rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
8152 metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
16758 transferase activity, transferring hexosyl groups inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB65327 Udp-glucuronosyltransferase protein 61 [Caenorhabditis elegans] ref|NP_504274.2| F39G3.1 [Caenorhabditis elegans] 0.0
blast CAE71190 Hypothetical protein CBG18047 [Caenorhabditis briggsae] 0.0
blast CAA84336 Hypothetical protein M88.1 [Caenorhabditis elegans] ref|NP_497918.1| M88.1 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 4.5E-66
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 4.5E-66
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 1.7E-59
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504274.2 2 5-27,494-516
F39G3.1 2 5-27,494-516
SNAP00000018224 1 424-446
GENEFINDER00000018243 2 460-482,494-516
Sequence
Target Sequence 
>C. ELEGANS:190651_AT
tggaagcttttgcatctctaccagactaccagtttgtcatgagatatgaaggagatgatc
tgaaggatagattgccggaaaatgtgcatttgtcgaagtggcttccacagaaggatctac
tgttgcacgagaagacaaaagcgtttattactcatggagggtacaattctttgcaggaag
caatatccgccggagtcccccttatcactattgctctcatgggcgatcagcccaaaaact
cccaaatcgccaagaaacatggatttgctgtgaacattgaaaaaggaacaatttccaagg
aaacggtcgttgaagctcttagagaaattttggagaatgatagctacaaacaaaaagtaa
cccggctctccgcgatggttcgagctcaaccaatgaagccggctgaacgtcttctgaaat
ggtcagagtttcttgcggaattcaagacacttgacaacctggtgccagctggacagaagc
ttaacttttatcaatatcattctcttgatgtaatcggcttcttgttcctagtagttttag
ttgtattctacattggcttccttattc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGGAAGCTTTTGCATCTCTACCAGA 378 547 914 Antisense
ATCTCTACCAGACTACCAGTTTGTC 522 31 927 Antisense
ATGTGCATTTGTCGAAGTGGCTTCC 594 49 995 Antisense
CAGGAAGCAATATCCGCCGGAGTCC 438 207 1087 Antisense
TCACTATTGCTCTCATGGGCGATCA 588 625 1118 Antisense
GAAACGGTCGTTGAAGCTCTTAGAG 350 357 1213 Antisense
TCCGCGATGGTTCGAGCTCAACCAA 500 595 1282 Antisense
TGAAGCCGGCTGAACGTCTTCTGAA 583 573 1307 Antisense
ACACTTGACAACCTGGTGCCAGCTG 289 109 1360 Antisense
ATGTAATCGGCTTCTTGTTCCTAGT 150 49 1421 Antisense
GTATTCTACATTGGCTTCCTTATTC 616 451 1456 Antisense
Sequence Source Affymetrix Proprietary Database