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[190649_at]

Description K07H8.6 /REP_DB=WormBase Gene ID /WP=CE18026 /GEN=vit-6 /TR=O45176 /GB=AAC04423.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=vitellogenin
Cluster 6grp_total > 99      4grp_total > 09      6grp_cgc > 79      6grp_cgc_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S5      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 94
1 2 3 4 range
A 7.7
(-3)
A 		29.5
(-1.6)
A 		24
(-1.9)
A 		100.8
(3)
A 		93
B 37.5
(-1.6)
A 		26.2
(-3)
A 		31.4
(-2.4)
A 		76
(3)
A 		50
C 6.6
(-3)
A 		43.4
(-0.3)
A 		24.3
(-1.7)
A 		87.7
(3)
A 		81
avr 17.3
(-3) 		33
(-1.7) 		26.6
(-2.2) 		88.2
(3) 		71

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11098
1 2 3 4 5 6 range
A 7.3
(-3)
A 		7.6
(-3)
A 		39
(-3)
A 		40.8
(-3)
A 		7694.1
(2.3)
P 		8643.2
(3)
P 		8636
B 31.6
(-3)
A 		4.6
(-3)
A 		6
(-3)
A 		31.8
(-3)
A 		7641.2
(3)
P 		7526.1
(2.9)
P 		7637
C 27
(-3)
A 		43
(-3)
A 		2.1
(-3)
A 		10.8
(-3)
A 		11099.9
(3)
P 		6550.4
(0.5)
P 		11098
avr 22
(-3) 		18.4
(-3) 		15.7
(-3) 		27.8
(-3) 		8811.7
(3) 		7573.2
(2.2) 		8796
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 2.8
(-3)
A 		6.4
(-1.2)
A 		6.3
(-1.3)
A 		14.8
(3)
A 		12
B 12
(0.4)
A 		6.5
(-3)
A 		7.3
(-2.5)
A 		16.2
(3)
A 		10
C 2.2
(-3)
A 		12.5
(1.9)
A 		8.5
(-0)
A 		14.8
(3)
A 		13
avr 5.7
(-3) 		8.5
(-1.3) 		7.4
(-1.9) 		15.3
(3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3591
1 2 3 4 5 6 range
A 1.3
(-3)
A 		2.7
(-3)
A 		8.5
(-3)
A 		10.4
(-3)
A 		2321.7
(3)
P 		2104.3
(2.4)
P 		2320
B 11
(-3)
A 		1.5
(-3)
A 		1.4
(-3)
A 		8.4
(-3)
A 		3104.5
(3)
P 		2806.5
(2.4)
P 		3103
C 10
(-3)
A 		13.1
(-3)
A 		0.5
(-3)
A 		2.2
(-3)
A 		3591.8
(3)
P 		2192.8
(0.7)
P 		3591
avr 7.4
(-3) 		5.8
(-3) 		3.5
(-3) 		7
(-3) 		3006
(3) 		2367.9
(1.7) 		3003
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190649_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8944
Sequence Type Exemplar sequence
Representative Public ID K07H8.6 NCBI
Target Description K07H8.6 /REP_DB=WormBase Gene ID /WP=CE18026 /GEN=vit-6 /TR=O45176 /GB=AAC04423.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=vitellogenin
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001028103(11), NM_001028105(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001028103 NCBI Caenorhabditis elegans K07H8.6a (vitellogenin) mRNA, complete cds. 11/11 None
NM_001028105 NCBI Caenorhabditis elegans K07H8.6c (vitellogenin) mRNA, complete cds. 11/11 None
SNAP00000006912 ENSEMBL cdna:SNAP chromosome:CEL140:IV:8261115:8266348:1 11/11 None
GENEFINDER00000006932 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:8261154:8266348:1 11/11 None
K07H8.6c ENSEMBL cdna:known chromosome:CEL140:IV:8261154:8266348:1 gene:K07H8.6 11/11 A 
K07H8.6a ENSEMBL cdna:known chromosome:CEL140:IV:8261154:8266445:1 gene:K07H8.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
177619 3 2 NM_001028103 173411_s_at (11), 190649_at (11)
NM_001028105 173411_s_at (11), 190649_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:8261159-8266354(+) 100.0 100.0
Public Domain and Genome References
Ensembl K07H8.6
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC04423 Vitellogenin structural genes (yolk protein genes) protein 6, isoform a [Caenorhabditis elegans] ref|NP_001023274.1| K07H8.6a [Caenorhabditis elegans] sp|P18948|VIT6_CAEEL Vitellogenin 6 precursor 0.0
blast AAQ91901 Vitellogenin structural genes (yolk protein genes) protein 6, isoform c [Caenorhabditis elegans] ref|NP_001023276.1| K07H8.6c [Caenorhabditis elegans] pir||F88750 protein vit-6 [imported] - Caenorhabditis elegans 0.0
blast CAA39670 vitellogenin [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001846 EMBL-EBI von Willebrand factor, type D 2.5E-40
Pfam IPR001747 EMBL-EBI Lipid transport protein, N-terminal 1.0E-126
Pfam IPR001846 EMBL-EBI von Willebrand factor, type D 2.5E-40
Pfam IPR001747 EMBL-EBI Lipid transport protein, N-terminal 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:190649_AT
aacacactcaagttcgattctgatgatgtcactgttcaattcgatggagtcaatgcccgt
attcacctttccgctctctacagaaaccaacaatgcggactttgcggccactacgacaac
gagaaggaaaccgaattctatgatgctgagaaccaagagaacaccattccaaagttcgcc
aagagctacttgtacaaggactccaagtgcaactacgagcgtgagatgttcgagaaggag
gagaacttccaacgcattgagaaaaatcaagaggaggagaaggaccaagagatgaactac
gaggaatctcgccgcgagcaagacgatgagccaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACACACTCAAGTTCGATTCTGATG 460 135 4345 Antisense
GATGTCACTGTTCAATTCGATGGAG 419 409 4369 Antisense
TCGATGGAGTCAATGCCCGTATTCA 170 601 4385 Antisense
TTCCGCTCTCTACAGAAACCAACAA 690 697 4413 Antisense
AACCAACAATGCGGACTTTGCGGCC 238 145 4429 Antisense
TTTGCGGCCACTACGACAACGAGAA 222 667 4445 Antisense
GAGAACACCATTCCAAAGTTCGCCA 88 393 4501 Antisense
GGACTCCAAGTGCAACTACGAGCGT 2 525 4542 Antisense
GGAGGAGAACTTCCAACGCATTGAG 353 515 4581 Antisense
AACTACGAGGAATCTCGCCGCGAGC 351 137 4639 Antisense
CGCCGCGAGCAAGACGATGAGCCAA 587 255 4654 Antisense
Sequence Source Affymetrix Proprietary Database