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[190648_at] Zinc finger, C2H2 type

Description T07G12.12 /REP_DB=WormBase Gene ID /WP=CE13409 /TR=O18068 /GB=CAB05281.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=Zinc finger, C2H2 type
Cluster 6grp_high1_10_10 > 86      6grp_total > 86      4grp_total > 05      6grp_cgc > 58      6grp_high1_sub > In      6grp_cgc_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 298
1 2 3 4 range
A 237.5
(-0.3)
P 		133.5
(-3)
A 		151.9
(-2.5)
A 		364.1
(3)
P 		231
B 245.4
(0.1)
P 		165.6
(-3)
M 		218.7
(-0.9)
A 		319.1
(3)
P 		154
C 284.3
(-0.6)
P 		186.7
(-3)
A 		186.6
(-3)
M 		431.9
(3)
P 		245
avr 255.7
(-0.3) 		161.9
(-3) 		185.7
(-2.3) 		371.7
(3) 		210

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 597
1 2 3 4 5 6 range
A 135.2
(-3)
A 		237.8
(-1.5)
P 		355.4
(0.3)
P 		308.9
(-0.4)
P 		407.7
(1.1)
P 		536.3
(3)
P 		401
B 165.6
(-3)
P 		248.8
(-1.6)
P 		236.9
(-1.8)
P 		282.9
(-1)
P 		362.8
(0.4)
P 		518.1
(3)
P 		353
C 186.6
(-3)
P 		364.5
(-1)
P 		276.7
(-2)
P 		296
(-1.8)
P 		377
(-0.9)
P 		732.2
(3)
P 		546
avr 162.5
(-3) 		283.7
(-1.3) 		289.7
(-1.2) 		295.9
(-1.2) 		382.5
(0) 		595.5
(3) 		433
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 65
1 2 3 4 range
A 86.5
(3)
P 		29
(-3)
A 		39.7
(-1.9)
A 		53.3
(-0.5)
P 		58
B 78.3
(3)
P 		40.9
(-3)
M 		50.7
(-1.4)
A 		68
(1.3)
P 		37
C 94.1
(3)
P 		53.7
(-3)
A 		65
(-1.3)
M 		72.8
(-0.2)
P 		40
avr 86.3
(3) 		41.2
(-3) 		51.8
(-1.6) 		64.7
(0.1) 		45

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 220
1 2 3 4 5 6 range
A 24.9
(-3)
A 		84.6
(0.4)
P 		77.4
(-0)
P 		78.3
(0)
P 		123
(2.6)
P 		130.6
(3)
P 		106
B 57.6
(-3)
P 		82.8
(-1.9)
P 		57.5
(-3)
P 		74.9
(-2.2)
P 		147.4
(1)
P 		193.2
(3)
P 		136
C 69.2
(-2.7)
P 		111.2
(-1.3)
P 		70.4
(-2.6)
P 		59.5
(-3)
P 		122
(-1)
P 		245.1
(3)
P 		186
avr 50.6
(-3) 		92.9
(-1.2) 		68.4
(-2.2) 		70.9
(-2.1) 		130.8
(0.5) 		189.6
(3) 		139
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190648_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8715
Sequence Type Exemplar sequence
Representative Public ID T07G12.12 NCBI
Target Description T07G12.12 /REP_DB=WormBase Gene ID /WP=CE13409 /TR=O18068 /GB=CAB05281.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=Zinc finger, C2H2 type
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069553(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069553 NCBI Caenorhabditis elegans T07G12.12 (T07G12.12) mRNA, complete cds. 10/11 None
SNAP00000026264 ENSEMBL cdna:SNAP chromosome:CEL140:IV:10561733:10563787:1 10/11 None
GENEFINDER00000026265 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:10561886:10563477:1 10/11 None
T07G12.12 ENSEMBL cdna:known chromosome:CEL140:IV:10561886:10563919:1 gene:T07G12.12 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:10561891-10563668(+) 100.0 100.0
Public Domain and Genome References
Gene Title Zinc finger, C2H2 type
Gene Symbol him-8
Ensembl T07G12.12
Entrez Gene 188247 Entrez gene
SwissProt O18068 EMBL-EBI
WormBase CE36715 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3676 nucleic acid binding inferred from electronic annotation QuickGO AmiGO
8270 zinc ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB05281 Hypothetical protein T07G12.12 [Caenorhabditis elegans] ref|NP_501954.2| T07G12.12 [Caenorhabditis elegans] 0.0
blast CAB05281 Hypothetical protein T07G12.12 [Caenorhabditis elegans] ref|NP_501954.2| T07G12.12 [Caenorhabditis elegans] 1.0E-172
blast CAB05281 Hypothetical protein T07G12.12 [Caenorhabditis elegans] ref|NP_501954.2| T07G12.12 [Caenorhabditis elegans] 1.0E-165
blast CAB05280 Hypothetical protein T07G12.10 [Caenorhabditis elegans] ref|NP_501952.1| T07G12.10 [Caenorhabditis elegans] 8.0E-25
blast CAB05280 Hypothetical protein T07G12.10 [Caenorhabditis elegans] ref|NP_501952.1| T07G12.10 [Caenorhabditis elegans] 4.0E-23
blast CAB05277 Hypothetical protein T07G12.6 [Caenorhabditis elegans] 4.0E-14
blast CAB05277 Hypothetical protein T07G12.6 [Caenorhabditis elegans] 5.0E-14
Sequence
Target Sequence 
>C. ELEGANS:190648_AT
aattcgccgattgtatcatctggacagtcggagtttctccaagacggtgtagacaacgat
ggaaatattgatgattatgaagagtatcagtcattaccaccgaatgatgatgttattatg
aatgaaacagaattgatggatgttgatcgaaccacagtgatgactccattacgaagtcct
acatttttcgattatcacaacgaatccggtgatgaagatcagttgaatgagaatgaaatg
aaatctccagacagcaaaaacgacgagattaataaagatgaaatccacaatattcaatgt
catttcccgaactgcaatcgagcaattgcgtggaagaggaaatatggaaaacttcgtctt
atcgatcacgcattggtccattgcgataaaaactttctgaaatgcaaaaaatgcaagcac
acttgtcatacaatccgtcaaatgcgttatcactatcgcatttttcactcaacatcaaaa
atggaaggcttcggagtgtctggcttgccaaccaaaaataaaggattccaaaaaattatg
aatgcttgtttcgcaggccaaatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATTCGCCGATTGTATCATCTGGAC 32 179 442 Antisense
GGAGTTTCTCCAAGACGGTGTAGAC 181 517 471 Antisense
AGAGTATCAGTCATTACCACCGAAT 311 67 522 Antisense
GAACCACAGTGATGACTCCATTACG 636 345 590 Antisense
AAGTCCTACATTTTTCGATTATCAC 530 157 615 Antisense
CAATGTCATTTCCCGAACTGCAATC 222 183 736 Antisense
GTCTTATCGATCACGCATTGGTCCA 86 467 797 Antisense
AGCACACTTGTCATACAATCCGTCA 562 75 857 Antisense
CTATCGCATTTTTCACTCAACATCA 531 223 894 Antisense
TTCGGAGTGTCTGGCTTGCCAACCA 50 695 931 Antisense
GAATGCTTGTTTCGCAGGCCAAATT 416 331 981 Antisense
Sequence Source Affymetrix Proprietary Database