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[190646_s_at]

Description F18E3.7 /REP_DB=WormBase Gene ID /WP=CE07083 /TR=SW:Q19564 /GB=AAK18939.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=D-amino acid oxidase
Cluster 6grp_highest_10_10 > 76      6grp_high1_10_10 > 76      4grp_highest_8_8 > 15      4grp_high_8_8 > 14      6grp_highest_nonorm > 68      6grp_total > 66      4grp_total > 09      6grp_highest_sub > Da      6grp_high1_sub > Da      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6571
1 2 3 4 range
A 1165.9
(-3)
P 		1478.8
(-2.7)
P 		1381.3
(-2.8)
P 		7633.9
(3)
P 		6468
B 1062.8
(-3)
P 		1729.5
(-2.3)
P 		1387.2
(-2.7)
P 		6735.6
(3)
P 		5673
C 1186
(-3)
P 		1255.2
(-2.9)
P 		1903.4
(-2.1)
P 		5914.2
(3)
P 		4728
avr 1138.2
(-3) 		1487.8
(-2.6) 		1557.3
(-2.6) 		6761.2
(3) 		5623

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1988
1 2 3 4 5 6 range
A 1416.9
(-3)
P 		1763.9
(-1.8)
P 		1757.1
(-1.8)
P 		1933.4
(-1.2)
P 		1577.4
(-2.4)
P 		3127.6
(3)
P 		1711
B 1752.1
(-3)
P 		1756.1
(-2.9)
P 		1829.4
(-2.5)
P 		1747.1
(-3)
P 		1807.7
(-2.6)
P 		2785.3
(3)
P 		1038
C 1305
(-3)
P 		1808
(-1.5)
P 		1573.3
(-2.2)
P 		1961.8
(-1)
P 		1453.9
(-2.6)
P 		3293
(3)
P 		1988
avr 1491.3
(-3) 		1776
(-1.9) 		1719.9
(-2.1) 		1880.8
(-1.5) 		1613
(-2.5) 		3068.6
(3) 		1577
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1114
1 2 3 4 range
A 424.5
(-2.2)
P 		321
(-3)
P 		361.1
(-2.7)
P 		1117.5
(3)
P 		797
B 338.9
(-2.9)
P 		427.1
(-2.4)
P 		321.4
(-3)
P 		1435.4
(3)
P 		1114
C 392.6
(-2.7)
P 		360.9
(-3)
P 		663.4
(-0.1)
P 		997.2
(3)
P 		636
avr 385.3
(-2.9) 		369.7
(-3) 		448.6
(-2.4) 		1183.4
(3) 		814

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 841
1 2 3 4 5 6 range
A 261.2
(-3)
P 		627.3
(1.4)
P 		382.7
(-1.5)
P 		490.3
(-0.3)
P 		476
(-0.4)
P 		761.5
(3)
P 		500
B 609.7
(-1.3)
P 		584.5
(-1.6)
P 		444.2
(-3)
P 		462.7
(-2.8)
P 		734.5
(-0.1)
P 		1038.6
(3)
P 		594
C 483.7
(-2.2)
P 		551.7
(-1.7)
P 		400.4
(-2.9)
P 		394.5
(-3)
P 		470.5
(-2.4)
P 		1102.3
(3)
P 		708
avr 451.5
(-2.5) 		587.8
(-1.1) 		409.1
(-3) 		449.2
(-2.6) 		560.3
(-1.4) 		967.5
(3) 		558
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 190646_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12263
Sequence Type Exemplar sequence
Representative Public ID F18E3.7 NCBI
Target Description F18E3.7 /REP_DB=WormBase Gene ID /WP=CE07083 /TR=SW:Q19564 /GB=AAK18939.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=D-amino acid oxidase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072507(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072507 NCBI Caenorhabditis elegans F18E3.7a (F18E3.7) mRNA, complete cds. 11/11 None
SNAP00000036723 ENSEMBL cdna:SNAP chromosome:CEL140:V:7436073:7437618:-1 11/11 None
GENEFINDER00000036727 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:7436073:7437624:-1 11/11 None
F18E3.7a ENSEMBL cdna:known chromosome:CEL140:V:7436057:7437624:-1 gene:F18E3.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_182319 5/11 Cross Hyb Matching Probes None
F18E3.7b 5/11 Cross Hyb Matching Probes None
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
179130 2 1 NM_072507 190646_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7436073-7437619(-) 100.0 100.0
Public Domain and Genome References
Ensembl F18E3.7
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_504908 F18E3.7a [Caenorhabditis elegans] gb|AAK18939.1| Hypothetical protein F18E3.7a [Caenorhabditis elegans] sp|Q19564|OXDA_CAEEL Putative D-amino-acid oxidase (DAMOX) (DAO) (DAAO) 0.0
blast CAE60771 Hypothetical protein CBG04460 [Caenorhabditis briggsae] 1.0E-178
blast CAE61727 Hypothetical protein CBG05678 [Caenorhabditis briggsae] 1.0E-142
Protein Domains
Database ID Description E-Value
Pfam IPR006076 EMBL-EBI FAD dependent oxidoreductase 1.0E-126
Pfam IPR006076 EMBL-EBI FAD dependent oxidoreductase 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:190646_S_AT
tacaccgcctacgcatcagaaggtaacaagtacgtgccttatttgaagaatttgctgctt
gagcaaaaaatcgagttcaagcaacaagaagtgacgagtttggacgcagtcgccgacgct
ggttacgatgttattgtaaactgcgcaggcttgtacggtggaaagttggctggtgatgac
gatacttgctaccccattagaggagtcattttggaagttgatgcaccatggcacaagcac
ttcaattatcgagactttactactttcacaattccaaaagagcacagcgtggtggttggg
tccaccaagcaggacaatcgatgggatttggagatcaccgacgaggatagaaatgatatt
ttgaaacgatacattgctttacatcctggaatgagagagccaaagattatcaaagaatgg
tcagcacttcgcccgggacgtaagcatgtcagaattgaagcgcagaagaggacatctgtt
ggaaactcaaaagattatatggttgtgcatcactatggtcacgggagcaac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TACACCGCCTACGCATCAGAAGGTA 648 643 418 Antisense
CGCCGACGCTGGTTACGATGTTATT 120 257 528 Antisense
AAACTGCGCAGGCTTGTACGGTGGA 309 123 555 Antisense
GGTGATGACGATACTTGCTACCCCA 138 501 589 Antisense
GCACCATGGCACAAGCACTTCAATT 431 315 640 Antisense
GAGACTTTACTACTTTCACAATTCC 670 391 668 Antisense
GAGCACAGCGTGGTGGTTGGGTCCA 546 389 697 Antisense
GATACATTGCTTTACATCCTGGAAT 688 423 785 Antisense
TCAAAGAATGGTCAGCACTTCGCCC 394 629 827 Antisense
TCGCCCGGGACGTAAGCATGTCAGA 572 597 846 Antisense
GCATCACTATGGTCACGGGAGCAAC 585 307 924 Antisense
Sequence Source Affymetrix Proprietary Database