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[190644_s_at]

Description C46H3.2 /REP_DB=WormBase Gene ID /WP=CE27865 /TR=Q18662 /GB=AAA82444.2 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=tyrosine-protein kinase
Cluster 6grp_high1_10_10 > 05      4grp_high_8_8 > 50      6grp_total > 05      4grp_total > 62      6grp_high1_sub > De      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 96
1 2 3 4 range
A 179.4
(3)
P 		128.8
(-1.2)
P 		150.7
(0.6)
P 		106.9
(-3)
P 		73
B 176.2
(3)
P 		148.7
(1.2)
P 		110.3
(-1.2)
P 		83.1
(-3)
P 		93
C 178.9
(3)
P 		150.7
(0.3)
P 		168
(2)
P 		116.3
(-3)
M 		63
avr 178.2
(3) 		142.7
(0.2) 		143
(0.2) 		102.1
(-3) 		76

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 161
1 2 3 4 5 6 range
A 183.8
(3)
P 		154.8
(1.3)
P 		133.3
(0)
P 		87.6
(-2.7)
P 		108.3
(-1.5)
P 		82.6
(-3)
P 		101
B 212.9
(3)
P 		164.2
(-0.4)
P 		155.8
(-0.9)
P 		130.5
(-2.7)
P 		148.1
(-1.5)
P 		125.7
(-3)
P 		87
C 205.8
(3)
P 		162.6
(1.3)
P 		112.3
(-0.7)
A 		116.9
(-0.5)
P 		122.4
(-0.3)
P 		52.3
(-3)
P 		154
avr 200.8
(3) 		160.5
(0.9) 		133.8
(-0.5) 		111.7
(-1.7) 		126.3
(-0.9) 		86.9
(-3) 		114
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 50
1 2 3 4 range
A 65.3
(3)
P 		28
(-1.5)
P 		39.4
(-0.1)
P 		15.7
(-3)
P 		50
B 56.2
(3)
P 		36.7
(-0)
P 		25.6
(-1.8)
P 		17.7
(-3)
P 		39
C 59.2
(3)
P 		43.3
(0.6)
P 		58.6
(2.9)
P 		19.6
(-3)
M 		40
avr 60.2
(3) 		36
(-0.4) 		41.2
(0.3) 		17.7
(-3) 		43

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 59
1 2 3 4 5 6 range
A 33.9
(-0.6)
P 		55.1
(3)
P 		29
(-1.5)
P 		22.2
(-2.6)
P 		32.7
(-0.8)
P 		20.1
(-3)
P 		35
B 74.1
(3)
P 		54.7
(0.1)
P 		37.8
(-2.5)
P 		34.6
(-3)
P 		60.2
(0.9)
P 		46.9
(-1.1)
P 		40
C 76.3
(3)
P 		49.6
(0.3)
P 		28.6
(-1.9)
A 		23.5
(-2.4)
P 		39.6
(-0.7)
P 		17.5
(-3)
P 		59
avr 61.4
(3) 		53.1
(1.6) 		31.8
(-2.1) 		26.8
(-3) 		44.2
(0) 		28.2
(-2.8) 		35
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 190644_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18502
Sequence Type Exemplar sequence
Representative Public ID C46H3.2 NCBI
Target Description C46H3.2 /REP_DB=WormBase Gene ID /WP=CE27865 /TR=Q18662 /GB=AAA82444.2 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=tyrosine-protein kinase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001029304(11), NM_001029305(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001029304 NCBI Caenorhabditis elegans C46H3.2a (C46H3.2) mRNA, complete cds. 11/11 None
NM_001029305 NCBI Caenorhabditis elegans C46H3.2b (C46H3.2) mRNA, complete cds. 11/11 None
SNAP00000034186 ENSEMBL cdna:SNAP chromosome:CEL140:X:1211963:1215373:-1 11/11 None
C46H3.2a ENSEMBL cdna:known chromosome:CEL140:X:1211765:1220024:-1 gene:C46H3.2 11/11 None
C46H3.2b.2 ENSEMBL cdna:known chromosome:CEL140:X:1211963:1219243:-1 gene:C46H3.2 11/11 None
C46H3.2b.1 ENSEMBL cdna:known chromosome:CEL140:X:1211963:1219259:-1 gene:C46H3.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:1211962-1215613(-) 100.0 100.0
Public Domain and Genome References
Ensembl C46H3.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA82444 Hypothetical protein C46H3.2a [Caenorhabditis elegans] ref|NP_001024475.1| C46H3.2a [Caenorhabditis elegans] 0.0
blast AAP31439 Hypothetical protein C46H3.2b [Caenorhabditis elegans] ref|NP_001024476.1| C46H3.2b [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001660 EMBL-EBI Sterile alpha motif SAM 1.2E-15
Pfam IPR001660 EMBL-EBI Sterile alpha motif SAM 4.5E-18
Pfam IPR001660 EMBL-EBI Sterile alpha motif SAM 1.2E-15
Pfam IPR001660 EMBL-EBI Sterile alpha motif SAM 4.5E-18
Pfam IPR001660 EMBL-EBI Sterile alpha motif SAM 1.2E-15
Pfam IPR001660 EMBL-EBI Sterile alpha motif SAM 4.5E-18
Sequence
Target Sequence 
>C. ELEGANS:190644_S_AT
gcatctgcatcaaggctcaacgatcctccgccgccagctccatcggcaccgaatcgagcg
ttccgggcgagctgcgacaaaatcgactacctcagttatcagcagaacaactggaagtcg
gcgtcagctcttccagaggcaccggcgtttttgtcagtgaagccgaaaagtacttcggat
ttgttgtttggagatgatacaccaattcggttaaatttggtgcctactgggaagatattg
agtgatattagcaagttgaagaaggatgaggaggaggatcaagagctggatgatccaaat
gagtgcccaccacccccagctccactacactgcaatgtgggtctccatcacatttcgtcg
ggcaacctgtcttccttcaactcctcactcagcaacgatcagtttccatttgcaaatgaa
aattgtggtacaataagatattcatctacacgcccggctactgcttttgacattccg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCATCTGCATCAAGGCTCAACGATC 638 309 898 Antisense
CTCCATCGGCACCGAATCGAGCGTT 695 235 935 Antisense
TTCCGGGCGAGCTGCGACAAAATCG 660 687 958 Antisense
AATCGACTACCTCAGTTATCAGCAG 501 167 978 Antisense
CAACTGGAAGTCGGCGTCAGCTCTT 12 189 1005 Antisense
GCACCGGCGTTTTTGTCAGTGAAGC 569 313 1036 Antisense
ATTCGGTTAAATTTGGTGCCTACTG 686 3 1102 Antisense
ACACTGCAATGTGGGTCTCCATCAC 669 109 1224 Antisense
TCCTCACTCAGCAACGATCAGTTTC 37 591 1279 Antisense
ATAAGATATTCATCTACACGCCCGG 451 25 1330 Antisense
CCCGGCTACTGCTTTTGACATTCCG 230 259 1350 Antisense
Sequence Source Affymetrix Proprietary Database