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[190640_s_at]

Description F09B9.2 /REP_DB=WormBase Gene ID /WP=CE15759 /GEN=unc-115 /TR=Q19240 /GB=CAA90057.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=LIM domains
Cluster 6grp_highest_10_10 > 42      6grp_high1_10_10 > 13      4grp_high_8_8 > 43      6grp_highest_nonorm > 61      6grp_total > 14      4grp_total > 61      6grp_highest_sub > 02      6grp_cgc > 32      6grp_high1_sub > De      6grp_cgc_sub > De      6grp_total_sub > Decrease      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 699
1 2 3 4 range
A 826.5
(3)
P 		694.2
(1.9)
P 		541.4
(0.6)
P 		127.6
(-3)
A 		699
B 787.7
(3)
P 		653
(1.6)
P 		493.9
(-0.1)
P 		226.3
(-3)
P 		561
C 750.3
(3)
P 		736
(2.8)
P 		636.7
(1.7)
P 		211.4
(-3)
P 		539
avr 788.2
(3) 		694.4
(2.1) 		557.3
(0.7) 		188.4
(-3) 		600

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 643
1 2 3 4 5 6 range
A 374.9
(-1.7)
P 		842.3
(3)
P 		268.4
(-2.8)
P 		453.7
(-0.9)
P 		246.6
(-3)
P 		352.9
(-1.9)
P 		596
B 453.7
(3)
P 		454.1
(3)
P 		343.5
(0.2)
P 		369.7
(0.9)
P 		263.2
(-1.8)
P 		215.8
(-3)
P 		238
C 832.1
(3)
P 		438.6
(-0.7)
P 		624.5
(1)
P 		292.5
(-2.1)
P 		463
(-0.5)
P 		199
(-3)
P 		633
avr 553.6
(2.5) 		578.3
(3) 		412.1
(-0.1) 		372
(-0.8) 		324.3
(-1.7) 		255.9
(-3) 		322
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 282
1 2 3 4 range
A 300.9
(3)
P 		150.7
(-0.2)
P 		141.5
(-0.4)
P 		18.7
(-3)
A 		282
B 251.2
(3)
P 		161.3
(0.3)
P 		114.5
(-1)
P 		48.2
(-3)
P 		203
C 248.4
(3)
P 		211.6
(2)
P 		221.9
(2.3)
P 		35.6
(-3)
P 		213
avr 266.8
(3) 		174.5
(0.6) 		159.3
(0.2) 		34.2
(-3) 		233

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 250
1 2 3 4 5 6 range
A 69.1
(-2.7)
P 		299.6
(3)
P 		58.4
(-3)
P 		115.1
(-1.6)
P 		74.4
(-2.6)
P 		85.9
(-2.3)
P 		241
B 157.9
(3)
P 		151.1
(2.5)
P 		83.4
(-2.8)
P 		97.9
(-1.7)
P 		106.9
(-1)
P 		80.5
(-3)
P 		77
C 308.4
(3)
P 		133.8
(-1.2)
P 		159
(-0.6)
P 		58.8
(-3)
P 		149.8
(-0.8)
P 		66.6
(-2.8)
P 		250
avr 178.5
(2.2) 		194.8
(3) 		100.3
(-1.8) 		90.6
(-2.3) 		110.4
(-1.3) 		77.7
(-3) 		117
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 190640_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16251
Sequence Type Exemplar sequence
Representative Public ID F09B9.2 NCBI
Target Description F09B9.2 /REP_DB=WormBase Gene ID /WP=CE15759 /GEN=unc-115 /TR=Q19240 /GB=CAA90057.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=LIM domains
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077301(11), NM_001029371(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077301 NCBI Caenorhabditis elegans UNCoordinated family member (unc-115) (unc-115) mRNA, complete cds. 11/11 A 
NM_001029371 NCBI Caenorhabditis elegans UNCoordinated family member (unc-115) (unc-115) mRNA, complete cds. 11/11 None
GENEFINDER00000037101 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:10147421:10152045:1 11/11 None
SNAP00000037095 ENSEMBL cdna:SNAP chromosome:CEL140:X:10148653:10152045:1 11/11 None
F09B9.2a ENSEMBL cdna:known chromosome:CEL140:X:10146821:10153062:1 gene:F09B9.2 11/11 A 
F09B9.2b ENSEMBL cdna:known chromosome:CEL140:X:10147421:10152045:1 gene:F09B9.2 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:10147465-10152045(+) 99.84 99.84
Public Domain and Genome References
Ensembl F09B9.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA90057 Hypothetical protein F09B9.2a [Caenorhabditis elegans] ref|NP_509702.3| UNCoordinated family member (unc-115) [Caenorhabditis elegans] 0.0
blast CAC70079 Hypothetical protein F09B9.2b [Caenorhabditis elegans] ref|NP_001024542.1| UNCoordinated family member (unc-115) [Caenorhabditis elegans] 0.0
blast AAC35506 putative actin-binding protein UNC-115 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR003128 EMBL-EBI Villin headpiece 2.7E-23
Pfam IPR001781 EMBL-EBI Zn-binding protein, LIM 8.3E-10
Pfam IPR001781 EMBL-EBI Zn-binding protein, LIM 1.4E-15
Pfam IPR001781 EMBL-EBI Zn-binding protein, LIM 2.1E-6
Pfam IPR003128 EMBL-EBI Villin headpiece 2.7E-23
Pfam IPR001781 EMBL-EBI Zn-binding protein, LIM 8.3E-10
Pfam IPR001781 EMBL-EBI Zn-binding protein, LIM 1.4E-15
Pfam IPR001781 EMBL-EBI Zn-binding protein, LIM 2.1E-6
Pfam IPR003128 EMBL-EBI Villin headpiece 2.7E-23
Pfam IPR001781 EMBL-EBI Zn-binding protein, LIM 1.4E-15
Pfam IPR001781 EMBL-EBI Zn-binding protein, LIM 2.1E-6
Sequence
Target Sequence 
>C. ELEGANS:190640_S_AT
gcaaaggctgccacttcattgggatccaagaaacgcaagcagaaccccatctggcaagaa
aatgccacatctcaaattccgttacgacgtcccaatcaatgcttcgccatctcgtcatct
caatcgtccgcgtccatgggttgtttggcaaggaggcgagagagaccagggaaacaatac
actgccgtgcttccacattccagaggatagccgggcgaatacactcagagccgccacact
tccgacggaattcggacaaaacttgtcgcttgagaacttggacaccacaattagcagcca
ctattctgaacactcgacgacggaatctggaacagctggaggacctcgctcagctggtgg
agctgtgcttcgctcttctcttcctgacatgagcaaacctgccaagcagtacgacctgct
gtttctccaaacgacaaattcggacctcccagaagatgttgacagacaacatttggaacg
acacttgccgcga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCAAAGGCTGCCACTTCATTGGGAT 44 319 1299 Antisense
AAATGCCACATCTCAAATTCCGTTA 59 119 1358 Antisense
ATTCCGTTACGACGTCCCAATCAAT 604 3 1374 Antisense
TCCGCGTCCATGGGTTGTTTGGCAA 135 595 1425 Antisense
GGGAAACAATACACTGCCGTGCTTC 420 493 1467 Antisense
GCCGGGCGAATACACTCAGAGCCGC 10 285 1508 Antisense
CCGCCACACTTCCGACGGAATTCGG 106 263 1529 Antisense
ATCTGGAACAGCTGGAGGACCTCGC 565 33 1623 Antisense
TCTTCCTGACATGAGCAAACCTGCC 592 615 1677 Antisense
TCGGACCTCCCAGAAGATGTTGACA 684 605 1738 Antisense
ACATTTGGAACGACACTTGCCGCGA 210 105 1767 Antisense
Sequence Source Affymetrix Proprietary Database