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[190638_s_at] ser/thr protein kinase

Description C09B9.4 /REP_DB=WormBase Gene ID /WP=CE06796 /TR=Q17853 /GB=AAB37560.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=ser-thr protein kinase
Cluster 6grp_total > 88      4grp_total > 03      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 146
1 2 3 4 range
A 22.9
(-2.6)
A 		15.5
(-3)
A 		15.5
(-3)
A 		114.7
(3)
A 		99
B 10.6
(-2.8)
A 		20.6
(3)
A 		18.1
(1.6)
A 		10.2
(-3)
A 		10
C 46.4
(-1.3)
A 		4.5
(-3)
A 		11.5
(-2.7)
A 		150.6
(3)
A 		146
avr 26.6
(-2) 		13.5
(-3) 		15
(-2.9) 		91.8
(3) 		78

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 199
1 2 3 4 5 6 range
A 32.5
(-2.2)
A 		24
(-2.4)
A 		4.5
(-3)
A 		5.8
(-3)
A 		102.6
(-0)
A 		203.1
(3)
P 		199
B 5.1
(-2.9)
A 		4.7
(-3)
A 		3.9
(-3)
A 		4.4
(-3)
A 		81.3
(0.6)
A 		133.4
(3)
M 		130
C 7.8
(-3)
A 		6.9
(-3)
A 		40.8
(-1.3)
A 		20.1
(-2.3)
A 		89.3
(1.2)
A 		124.8
(3)
A 		118
avr 15.1
(-2.8) 		11.9
(-2.9) 		16.4
(-2.7) 		10.1
(-3) 		91.1
(0.4) 		153.8
(3) 		144
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 24
1 2 3 4 range
A 8.4
(-0.8)
A 		3.4
(-3)
A 		4
(-2.7)
A 		16.8
(3)
A 		13
B 3.4
(-0.5)
A 		5.1
(3)
A 		4.2
(1.1)
A 		2.2
(-3)
A 		3
C 15.4
(0.5)
A 		1.3
(-3)
A 		4
(-2.3)
A 		25.4
(3)
A 		24
avr 9.1
(0) 		3.3
(-3) 		4.1
(-2.6) 		14.8
(3) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 49
1 2 3 4 5 6 range
A 6
(-2.4)
A 		8.5
(-2.1)
A 		1
(-3)
A 		1.5
(-2.9)
A 		31
(0.7)
A 		49.5
(3)
P 		49
B 1.8
(-2.9)
A 		1.6
(-2.9)
A 		1
(-3)
A 		1.2
(-3)
A 		33
(0.9)
A 		49.7
(3)
M 		49
C 2.9
(-2.9)
A 		2.1
(-3)
A 		10.4
(-1.7)
A 		4
(-2.7)
A 		28.9
(1.1)
A 		41.8
(3)
A 		40
avr 3.6
(-2.8) 		4.1
(-2.7) 		4.1
(-2.7) 		2.2
(-3) 		31
(0.9) 		47
(3) 		45
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 190638_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11141
Sequence Type Exemplar sequence
Representative Public ID C09B9.4 NCBI
Target Description C09B9.4 /REP_DB=WormBase Gene ID /WP=CE06796 /TR=Q17853 /GB=AAB37560.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=ser-thr protein kinase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068307(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068307 NCBI Caenorhabditis elegans C09B9.4 (C09B9.4) mRNA, complete cds. 11/11 A 
SNAP00000007229 ENSEMBL cdna:SNAP chromosome:CEL140:IV:5031627:5033298:-1 11/11 None
GENEFINDER00000007239 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:5031627:5033298:-1 11/11 None
C09B9.4 ENSEMBL cdna:known chromosome:CEL140:IV:5031611:5033358:-1 gene:C09B9.4 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:5031632-5033304(-) 100.0 100.0
Public Domain and Genome References
Gene Title ser/thr protein kinase
Ensembl C09B9.4
Entrez Gene 177271 Entrez gene
SwissProt Q17853 EMBL-EBI
WormBase CE06796 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6468 protein amino acid phosphorylation inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4672 protein kinase activity inferred from electronic annotation QuickGO AmiGO
4674 protein serine/threonine kinase activity inferred from electronic annotation QuickGO AmiGO
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB37560 Hypothetical protein C09B9.4 [Caenorhabditis elegans] ref|NP_500708.1| C09B9.4 [Caenorhabditis elegans] 0.0
blast CAE72809 Hypothetical protein CBG20086 [Caenorhabditis briggsae] 1.0E-165
blast CAB05158 Hypothetical protein C49C3.2 [Caenorhabditis elegans] ref|NP_503078.2| C49C3.2 [Caenorhabditis elegans] 1.0E-127
Sequence
Target Sequence 
>C. ELEGANS:190638_S_AT
gcttgatttcggattaactcgcaaatatcttgagcacaacggtagtcgcagtcttctccg
tccgcatggtccatctgttggcacatttccatatgctccactagcatctctcggcttctg
tgatcaatcaccaatcgatgatattgaaggatggttgtacatgattgttcatttattgaa
aggtggactcccgtggcacaactcgaaaagagccctgaatctgccaaaagtcagagaatg
gaaaatgtattgtcgtcgtccgggtggcaagcattatttattcgcaggcattccgaaagg
atgggctgatattttcgacgtta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCTTGATTTCGGATTAACTCGCAAA 226 307 513 Antisense
GAGCACAACGGTAGTCGCAGTCTTC 427 389 544 Antisense
GCATGGTCCATCTGTTGGCACATTT 277 311 576 Antisense
TGGCACATTTCCATATGCTCCACTA 584 545 591 Antisense
CTCTCGGCTTCTGTGATCAATCACC 109 231 620 Antisense
TTGAAAGGTGGACTCCCGTGGCACA 266 701 688 Antisense
AAGAGCCCTGAATCTGCCAAAAGTC 388 153 720 Antisense
GAAAATGTATTGTCGTCGTCCGGGT 433 353 753 Antisense
GTCGTCCGGGTGGCAAGCATTATTT 279 471 767 Antisense
AGCATTATTTATTCGCAGGCATTCC 707 77 782 Antisense
GGATGGGCTGATATTTTCGACGTTA 705 513 811 Antisense
Sequence Source Affymetrix Proprietary Database