[Home] | [Total List]

[190637_s_at] xanthine dehydrogenase

Description F55B11.1 /REP_DB=WormBase Gene ID /WP=CE16116 /TR=O17892 /GB=CAB05902.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=xanthine dehydrogenase
Cluster 6grp_highest_10_10 > 43      6grp_high1_10_10 > 13      4grp_highest_8_8 > 28      4grp_high_8_8 > 0      6grp_highest_nonorm > 60      6grp_total > 12      4grp_total > 07      6grp_highest_sub > 02      6grp_high1_sub > De      6grp_total_sub > Hat      6grp_rule_based > S2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 373
1 2 3 4 range
A 895.1
(3)
P 		701.7
(-3)
P 		885.1
(2.7)
P 		875.1
(2.4)
P 		193
B 923.4
(3)
P 		662.1
(-3)
P 		861.9
(1.6)
P 		879.8
(2)
P 		261
C 874.7
(0.6)
P 		651.8
(-3)
P 		1025.2
(3)
P 		814.1
(-0.4)
P 		373
avr 897.7
(2.4) 		671.9
(-3) 		924.1
(3) 		856.3
(1.4) 		252

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 451
1 2 3 4 5 6 range
A 345.7
(-0.6)
P 		609.6
(3)
P 		427.1
(0.5)
P 		290.9
(-1.4)
P 		171.6
(-3)
P 		195.5
(-2.7)
P 		438
B 565.9
(2.2)
P 		622.3
(3)
P 		347.7
(-0.7)
P 		319
(-1.1)
P 		173.2
(-3)
P 		209.6
(-2.5)
P 		449
C 477.8
(1.3)
P 		597.2
(3)
P 		482.3
(1.4)
P 		309.5
(-1.1)
P 		171.4
(-3)
P 		187.3
(-2.8)
P 		426
avr 463.1
(1) 		609.7
(3) 		419
(0.4) 		306.5
(-1.2) 		172.1
(-3) 		197.5
(-2.7) 		438
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 229
1 2 3 4 range
A 325.9
(3)
P 		152.3
(-2.3)
P 		231.4
(0.1)
P 		128.1
(-3)
P 		198
B 294.4
(3)
P 		163.5
(-3)
P 		199.7
(-1.3)
P 		187.5
(-1.9)
P 		131
C 289.5
(1.2)
P 		187.4
(-1.6)
P 		357.3
(3)
P 		137.3
(-3)
P 		220
avr 303.3
(3) 		167.7
(-2.3) 		262.8
(1.4) 		151
(-3) 		152

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 169
1 2 3 4 5 6 range
A 63.7
(-2.4)
P 		216.8
(3)
P 		93
(-1.4)
P 		73.8
(-2.1)
P 		51.8
(-2.9)
P 		47.6
(-3)
P 		169
B 196.9
(2.6)
P 		207.1
(3)
P 		84.4
(-2.4)
P 		84.5
(-2.4)
P 		70.4
(-3)
P 		78.1
(-2.7)
P 		137
C 177.1
(2.8)
P 		182.2
(3)
P 		122.8
(0.2)
P 		62.2
(-2.7)
P 		55.5
(-3)
P 		62.7
(-2.7)
P 		127
avr 145.9
(0.6) 		202
(3) 		100.1
(-1.3) 		73.5
(-2.4) 		59.2
(-3) 		62.8
(-2.8) 		143
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 190637_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9000
Sequence Type Exemplar sequence
Representative Public ID F55B11.1 NCBI
Target Description F55B11.1 /REP_DB=WormBase Gene ID /WP=CE16116 /TR=O17892 /GB=CAB05902.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=xanthine dehydrogenase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070346(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070346 NCBI Caenorhabditis elegans F55B11.1 (F55B11.1) mRNA, complete cds. 11/11 None
SNAP00000013150 ENSEMBL cdna:SNAP chromosome:CEL140:IV:14401151:14412853:-1 11/11 None
GENEFINDER00000013193 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:14400564:14412853:-1 11/11 None
F55B11.1 ENSEMBL cdna:known chromosome:CEL140:IV:14401102:14412853:-1 gene:F55B11.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:14401156-14412859(-) 99.88 100.0
Public Domain and Genome References
Gene Title xanthine dehydrogenase
Ensembl F55B11.1
Entrez Gene 178381 Entrez gene
SwissProt O17892 EMBL-EBI
WormBase CE16116 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATGENOME1:16335_AT xanthine dehydrogenase, putative at
ATGENOME1:16334_S_AT xanthine dehydrogenase, putative at
ATH1-121501:253212_S_AT xanthine dehydrogenase, putative at
CANINE:1587062_AT similar to Xanthine dehydrogenase/oxidase cfa
CANINE_2:CFA.12167.1.A1_AT similar to Xanthine dehydrogenase/oxidase cfa
CANINE_2:CFAAFFX.9444.1.S1_AT similar to Xanthine dehydrogenase/oxidase cfa
CANINE_2:CFAAFFX.9452.1.S1_S_AT similar to Xanthine dehydrogenase/oxidase cfa
DROSOPHILA_2:1638882_AT rosy dm
DROSGENOME1:152200_AT rosy dm
CHICKEN:GGA.2494.1.S1_AT xanthine dehydrogenase gga
CHICKEN:GGA.2494.1.S2_AT xanthine dehydrogenase gga
HUGENEFL:U39487_AT xanthine dehydrogenase hs
HG-U133A:210301_AT xanthine dehydrogenase hs
HG-U133_PLUS_2:210301_AT xanthine dehydrogenase hs
HG-FOCUS:210301_AT xanthine dehydrogenase hs
HG-U133A_2:210301_AT xanthine dehydrogenase hs
U133_X3P:G984266_3P_AT xanthine dehydrogenase hs
U133_X3P:HS.125376.0.A1_3P_AT Xanthine dehydrogenase hs
HG-U133_PLUS_2:241994_AT Xanthine dehydrogenase hs
HG-U133B:241994_AT Xanthine dehydrogenase hs
HG-U95AV2:33463_AT Xanthine dehydrogenase hs
HG-U95D:76770_AT Xanthine dehydrogenase hs
MG-U74AV2:102348_AT xanthine dehydrogenase mm
MU11KSUBB:X75129_S_AT xanthine dehydrogenase mm
MG-U74AV2:97950_AT xanthine dehydrogenase mm
MOE430A:1424607_A_AT xanthine dehydrogenase mm
MOUSE430A_2:1424607_A_AT xanthine dehydrogenase mm
MOUSE430_2:1424607_A_AT xanthine dehydrogenase mm
MOE430A:1424609_A_AT xanthine dehydrogenase mm
MOUSE430A_2:1424609_A_AT xanthine dehydrogenase mm
MOUSE430_2:1424609_A_AT xanthine dehydrogenase mm
MOE430A:1451006_AT xanthine dehydrogenase mm
MOUSE430A_2:1451006_AT xanthine dehydrogenase mm
MOUSE430_2:1451006_AT xanthine dehydrogenase mm
MU19KSUBC:TC37142_AT Similar to hypothetical protein MGC37588, mRNA (cDNA clone MGC:28125 IMAGE:3980327) mm
MU19KSUBC:TC37142_G_AT Similar to hypothetical protein MGC37588, mRNA (cDNA clone MGC:28125 IMAGE:3980327) mm
RG-U34A:RC_AI172247_AT hypothetical gene supported by NM_017154 rn
RAE230A:1369973_AT hypothetical gene supported by NM_017154 rn
RAT230_2:1369973_AT hypothetical gene supported by NM_017154 rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5489 electron transporter activity inferred from electronic annotation QuickGO AmiGO
16491 oxidoreductase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB05902 Hypothetical protein F55B11.1 [Caenorhabditis elegans] ref|NP_502747.1| F55B11.1 [Caenorhabditis elegans] 0.0
blast CAE73991 Hypothetical protein CBG21624 [Caenorhabditis briggsae] 0.0
blast EAA43934 ENSANGP00000025172 [Anopheles gambiae str. PEST] ref|XP_317567.2| ENSANGP00000025172 [Anopheles gambiae str. PEST] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR008274 EMBL-EBI Aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding 1.0E-126
Pfam IPR000674 EMBL-EBI Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead 5.1E-53
Pfam IPR002346 EMBL-EBI Molybdopterin dehydrogenase, FAD-binding 7.4E-95
Pfam IPR002888 EMBL-EBI [2Fe-2S]-binding 1.9E-64
Pfam IPR005107 EMBL-EBI CO dehydrogenase flavoprotein C-terminal domain 9.1E-62
Pfam IPR001041 EMBL-EBI Ferredoxin 8.1E-11
Sequence
Target Sequence 
>C. ELEGANS:190637_S_AT
tcactttccgcttcaggttttggaataattcatcacgaaccagtggactttttcaatgga
aaaggagctgaattatttggatattcagtgtatggaacggcatgctgtgaagtagaaatt
gattgtttgactggagatcatcatttattacgtactgatattgtaatggatgttggagaa
tcattgaatcctgcaattgatattggacaaattgaaggagcttttattcaaggttacggt
ctttttacaatggaagaaatcaaaataagacccgatggaatcagattgacacgtggacct
ggaaattataaaattccatctgctgatgatgctccaagacattttaatgtttcacttttg
ggaaatagtagtaataaaatgggcattttctcgtcgaaagccattggagaaccaccattg
tttttgggaagttgtgcattttttgcgattcgagaagctgtcagagcctatagaattcaa
aatggaaatgctgactatttcgtattccactctccagcaactcctgaacgtattcgtatg
gcttgtgaagattttgtcacttctcatgttccagaact

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCACTTTCCGCTTCAGGTTTTGGAA 470 621 3469 Antisense
AATTCATCACGAACCAGTGGACTTT 312 177 3495 Antisense
GGAGATCATCATTTATTACGTACTG 214 519 3601 Antisense
CAGATTGACACGTGGACCTGGAAAT 92 205 3750 Antisense
ATCTGCTGATGATGCTCCAAGACAT 120 33 3786 Antisense
CATTTTCTCGTCGAAAGCCATTGGA 698 215 3852 Antisense
TGGAGAACCACCATTGTTTTTGGGA 543 547 3873 Antisense
GATTCGAGAAGCTGTCAGAGCCTAT 169 433 3915 Antisense
CTCTCCAGCAACTCCTGAACGTATT 609 231 3978 Antisense
GAACGTATTCGTATGGCTTGTGAAG 172 347 3994 Antisense
TTGTCACTTCTCATGTTCCAGAACT 26 705 4022 Antisense
Sequence Source Affymetrix Proprietary Database