[Home] | [Total List]

[190636_at] tyrosine-protein kinase

Description T08G5.2 /REP_DB=WormBase Gene ID /WP=CE21175 /TR=Q9XUQ1 /GB=CAB04724.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=tyrosine-protein kinase
Cluster 6grp_total > 27      4grp_total > 04      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 148
1 2 3 4 range
A 8.8
(-2.6)
A 		16.7
(-2.1)
A 		2.3
(-3)
A 		97.3
(3)
A 		95
B 60.5
(3)
A 		5.6
(-3)
A 		25.1
(-0.9)
A 		8.1
(-2.7)
A 		55
C 13.2
(-2.5)
A 		4.8
(-2.9)
A 		2
(-3)
A 		149.6
(3)
A 		148
avr 27.5
(-1.5) 		9
(-3) 		9.8
(-2.9) 		85
(3) 		76

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 65
1 2 3 4 5 6 range
A 57.7
(3)
A 		20.1
(-2)
A 		30.1
(-0.7)
A 		15.6
(-2.6)
A 		12.6
(-3)
A 		32.2
(-0.4)
A 		45
B 67.1
(3)
A 		38.7
(0.2)
A 		42.7
(0.6)
A 		5.7
(-3)
A 		16.4
(-2)
A 		32
(-0.4)
A 		61
C 68.1
(3)
A 		24.2
(-1.1)
A 		4.4
(-2.9)
A 		33.9
(-0.2)
A 		3.5
(-3)
A 		43.7
(0.7)
A 		65
avr 64.3
(3) 		27.7
(-1.1) 		25.7
(-1.3) 		18.4
(-2.1) 		10.8
(-3) 		36
(-0.2) 		54
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 25
1 2 3 4 range
A 3.2
(-1.9)
A 		3.6
(-1.7)
A 		0.6
(-3)
A 		14.2
(3)
A 		14
B 19.3
(3)
A 		1.4
(-3)
A 		5.8
(-1.5)
A 		1.7
(-2.9)
A 		18
C 4.4
(-2.1)
A 		1.4
(-2.8)
A 		0.7
(-3)
A 		25.2
(3)
A 		25
avr 9
(0.6) 		2.1
(-3) 		2.4
(-2.8) 		13.7
(3) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 24
1 2 3 4 5 6 range
A 10.6
(3)
A 		7.1
(-0.1)
A 		6.6
(-0.5)
A 		4
(-2.8)
A 		3.8
(-3)
A 		7.8
(0.5)
A 		7
B 23.4
(3)
A 		12.9
(0.1)
A 		10.4
(-0.6)
A 		1.5
(-3)
A 		6.7
(-1.6)
A 		11.9
(-0.2)
A 		22
C 25.2
(3)
A 		7.4
(-1.4)
A 		1.1
(-3)
A 		6.8
(-1.6)
A 		1.1
(-3)
A 		14.6
(0.4)
A 		24
avr 19.7
(3) 		9.1
(-1) 		6
(-2.2) 		4.1
(-2.9) 		3.9
(-3) 		11.4
(-0.2) 		16
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190636_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13187
Sequence Type Exemplar sequence
Representative Public ID T08G5.2 NCBI
Target Description T08G5.2 /REP_DB=WormBase Gene ID /WP=CE21175 /TR=Q9XUQ1 /GB=CAB04724.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=tyrosine-protein kinase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074083(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074083 NCBI Caenorhabditis elegans T08G5.2 (T08G5.2) mRNA, complete cds. 11/11 None
GENEFINDER00000009131 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:14023819:14028096:-1 11/11 None
T08G5.2 ENSEMBL cdna:known chromosome:CEL140:V:14023792:14028096:-1 gene:T08G5.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000009107 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:14023791-14028096(-) 100.0 100.0
Public Domain and Genome References
Gene Title tyrosine-protein kinase
Ensembl T08G5.2
Entrez Gene 179900 Entrez gene
SwissProt Q9XUQ1 EMBL-EBI
WormBase CE21175 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6468 protein amino acid phosphorylation inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4672 protein kinase activity inferred from electronic annotation QuickGO AmiGO
4674 protein serine/threonine kinase activity inferred from electronic annotation QuickGO AmiGO
4713 protein-tyrosine kinase activity inferred from electronic annotation QuickGO AmiGO
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB04724 Hypothetical protein T08G5.2 [Caenorhabditis elegans] ref|NP_506484.1| T08G5.2 [Caenorhabditis elegans] 0.0
blast CAE61032 Hypothetical protein CBG04775 [Caenorhabditis briggsae] 8.0E-53
blast CAE61031 Hypothetical protein CBG04774 [Caenorhabditis briggsae] 2.0E-27
Protein Domains
Database ID Description E-Value
Pfam IPR000719 EMBL-EBI Protein kinase 1.1E-25
Sequence
Target Sequence 
>C. ELEGANS:190636_AT
tcaacgattcctgtgaagtgtgcaaagctgattgcagtgaatagttgttcagtgaaagaa
gtagaaagctcgtgcaacgtgagaggaactcaaagctaccaaatgttcttgaatcgtcat
atacagacatggatgttaaatgtaaaaattgtggctaattttacttctgcaactaaatca
tttccaagctatacaaaaactcccaataaaatttttaaaaaaagctccacgcaaaactcg
aagataaccacggcctatcaattttcattctgcacatcagcgaaaactcaggcagcatta
gaaaaatgtctcaatgcttttgatggcgttgctgctttcaaaaattcaacaagtctacaa
aacccgaaaaaaattgaacgaatgaatggatattgttccacaatagaggcaaattttcca
gtactcaaaagatgtatggactacgatgcgaaatccgttgagaagttactatccttttgc
agtt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCAACGATTCCTGTGAAGTGTGCAA 561 629 1582 Antisense
GAAGTAGAAAGCTCGTGCAACGTGA 252 337 1639 Antisense
AGCTACCAAATGTTCTTGAATCGTC 210 79 1675 Antisense
GTGGCTAATTTTACTTCTGCAACTA 177 491 1732 Antisense
AAAAAGCTCCACGCAAAACTCGAAG 517 129 1800 Antisense
AAACTCGAAGATAACCACGGCCTAT 475 127 1815 Antisense
CACGGCCTATCAATTTTCATTCTGC 529 197 1830 Antisense
GCACATCAGCGAAAACTCAGGCAGC 168 317 1853 Antisense
TGCTTTTGATGGCGTTGCTGCTTTC 47 579 1896 Antisense
AGAGGCAAATTTTCCAGTACTCAAA 113 69 1986 Antisense
GAGAAGTTACTATCCTTTTGCAGTT 315 359 2041 Antisense
Sequence Source Affymetrix Proprietary Database