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[190635_at] Yeast YCY4 like protein

Description F20C5.4 /REP_DB=WormBase Gene ID /WP=CE03241 /TR=Q19635 /GB=CAA92297.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=Yeast YCY4 like protein
Cluster 6grp_highest_10_10 > 34      6grp_high1_10_10 > 41      4grp_highest_8_8 > 54      4grp_high_8_8 > 10      6grp_highest_nonorm > 52      6grp_total > 40      4grp_total > 22      6grp_highest_sub > 02_03      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 527
1 2 3 4 range
A 712.5
(2.8)
P 		361.2
(-1.5)
P 		241.8
(-3)
P 		726.2
(3)
P 		484
B 731.4
(3)
P 		333.6
(-2.1)
P 		259.7
(-3)
P 		607.7
(1.4)
P 		472
C 722.3
(2.4)
P 		393
(-2)
P 		320
(-3)
P 		768.8
(3)
P 		449
avr 722.1
(3) 		362.6
(-1.8) 		273.8
(-3) 		700.9
(2.7) 		448

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 585
1 2 3 4 5 6 range
A 394.6
(-1.7)
P 		719.1
(1.7)
P 		838.9
(3)
P 		679.9
(1.3)
P 		313.7
(-2.5)
P 		269.3
(-3)
P 		570
B 533.8
(0.4)
P 		735.4
(3)
P 		667.5
(2.1)
P 		496.4
(-0.1)
P 		269.2
(-3)
P 		265.4
(-3)
P 		470
C 622.8
(0.7)
P 		745.6
(2)
P 		761.7
(2.2)
P 		842.2
(3)
P 		278.5
(-2.8)
P 		257.2
(-3)
P 		585
avr 517.1
(0.1) 		733.4
(2.7) 		756
(3) 		672.8
(2) 		287.1
(-2.7) 		264
(-3) 		492
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 199
1 2 3 4 range
A 259.4
(3)
P 		78.4
(-2.5)
P 		63.2
(-3)
P 		106.3
(-1.7)
P 		196
B 233.2
(3)
P 		82.4
(-2.2)
P 		60.2
(-3)
P 		129.5
(-0.6)
P 		173
C 239.1
(3)
P 		113
(-2.9)
P 		111.5
(-3)
P 		129.6
(-2.1)
P 		128
avr 243.9
(3) 		91.3
(-2.5) 		78.3
(-3) 		121.8
(-1.4) 		166

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 190
1 2 3 4 5 6 range
A 72.7
(-2.8)
P 		255.7
(3)
P 		182.7
(0.7)
P 		172.4
(0.4)
P 		94.7
(-2.1)
P 		65.6
(-3)
P 		190
B 185.7
(0.6)
P 		244.8
(3)
P 		162.1
(-0.4)
P 		131.5
(-1.7)
P 		109.4
(-2.6)
P 		99
(-3)
P 		146
C 230.8
(3)
P 		227.5
(2.9)
P 		193.9
(1.5)
P 		169.4
(0.5)
P 		90.1
(-2.8)
P 		86.1
(-3)
P 		145
avr 163.1
(-0) 		242.7
(3) 		179.6
(0.6) 		157.8
(-0.2) 		98.1
(-2.5) 		83.6
(-3) 		159
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190635_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9735
Sequence Type Exemplar sequence
Representative Public ID F20C5.4 NCBI
Target Description F20C5.4 /REP_DB=WormBase Gene ID /WP=CE03241 /TR=Q19635 /GB=CAA92297.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=Yeast YCY4 like protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069110(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069110 NCBI Caenorhabditis elegans F20C5.4 (F20C5.4) mRNA, complete cds. 11/11 None
SNAP00000022217 ENSEMBL cdna:SNAP chromosome:CEL140:IV:8764862:8767288:1 11/11 None
F20C5.4 ENSEMBL cdna:known chromosome:CEL140:IV:8764862:8767288:1 gene:F20C5.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000022224 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:8764867-8767294(+) 100.0 100.0
Public Domain and Genome References
Gene Title Yeast YCY4 like protein
Ensembl F20C5.4
Entrez Gene 184717 Entrez gene
SwissProt Q19635 EMBL-EBI
WormBase CE03241 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA92297 Hypothetical protein F20C5.4 [Caenorhabditis elegans] ref|NP_501511.1| F20C5.4 [Caenorhabditis elegans] 0.0
blast CAE56237 Hypothetical protein CBG23873 [Caenorhabditis briggsae] 1.0E-166
blast CAE58533 Hypothetical protein CBG01690 [Caenorhabditis briggsae] 1.0E-62
Protein Domains
Database ID Description E-Value
Pfam IPR005045 EMBL-EBI Eukaryotic protein of unknown function DUF284 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_501511.1 1 329-351
F20C5.4 1 329-351
SNAP00000022217 1 329-351
Sequence
Target Sequence 
>C. ELEGANS:190635_AT
ggaactaaagttcccattgcgccgtgtgggaaagtggctgattcaatgtttaacgatacc
ttcgaattattttatatcaatgataaagcctcaaacgcggtaacacgggttccatggaca
actcgtggagtactcggtgcaactgaaatgaaaagaaaattcagaaatccgattcgagcg
gaaaaccagacattatgtgatgtgtttgcgggaacaatgcctccgccatcatggagatat
ccgatctgtcaattgggactaaacagtattgatccagatgttggcattggtttcgagaac
attgattttatggtttggatgaaggttgcagctcttccaaaattcagaaaactgtataga
atactgaatcgacaagttgatatgttcagtaatggattacctaaaggacaatatcagttg
accattaattacaactatccagtggatatgtattcgggcgacaagtacttcgttatagcc
aatgaaaactgggttggacccaggaatctgtttctaccagtaatctatttggttgttgga
acattcttacttctcgttactattctcttcatatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAACTAAAGTTCCCATTGCGCCGT 500 525 481 Antisense
TAAAGCCTCAAACGCGGTAACACGG 615 627 564 Antisense
AACACGGGTTCCATGGACAACTCGT 149 121 582 Antisense
AACTCGTGGAGTACTCGGTGCAACT 316 141 600 Antisense
GTTTGCGGGAACAATGCCTCCGCCA 239 451 684 Antisense
GCCTCCGCCATCATGGAGATATCCG 193 283 699 Antisense
GGATGAAGGTTGCAGCTCTTCCAAA 450 513 797 Antisense
GACAAGTACTTCGTTATAGCCAATG 62 365 940 Antisense
GGACCCAGGAATCTGTTTCTACCAG 100 521 976 Antisense
GGAACATTCTTACTTCTCGTTACTA 175 529 1018 Antisense
TTCTCGTTACTATTCTCTTCATATT 109 691 1031 Antisense
Sequence Source Affymetrix Proprietary Database