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[190633_at] transmembranous domains

Description C35A5.7 /REP_DB=WormBase Gene ID /WP=CE05365 /TR=Q18475 /GB=CAA94909.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=transmembranous domains
Cluster 6grp_highest_10_10 > 43      6grp_high1_10_10 > 34      4grp_highest_8_8 > 46      4grp_high_8_8 > 10      6grp_highest_nonorm > 70      6grp_total > 02      4grp_total > 15      6grp_highest_sub > 02      6grp_high1_sub > 02      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 276
1 2 3 4 range
A 437.1
(3)
P 		240.6
(-3)
P 		298.4
(-1.2)
P 		427.1
(2.7)
P 		197
B 447.6
(3)
P 		306.4
(-0.9)
P 		231.4
(-3)
P 		418.4
(2.2)
P 		216
C 413.3
(1.2)
P 		221.9
(-3)
P 		253.6
(-2.3)
P 		497.4
(3)
P 		276
avr 432.7
(2.5) 		256.3
(-3) 		261.1
(-2.8) 		447.6
(3) 		191

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 360
1 2 3 4 5 6 range
A 319.2
(3)
P 		315
(2.8)
P 		248.3
(-0.6)
P 		280.5
(1)
P 		258.1
(-0.1)
P 		201.2
(-3)
P 		118
B 313.8
(1.1)
P 		370.5
(3)
P 		190.9
(-3)
P 		227.6
(-1.8)
P 		259
(-0.7)
P 		230.1
(-1.7)
P 		180
C 257.5
(-1.2)
P 		510.9
(3)
P 		250.6
(-1.3)
P 		281.1
(-0.8)
P 		150.7
(-3)
P 		207.7
(-2.1)
P 		360
avr 296.8
(-0.3) 		398.8
(3) 		229.9
(-2.5) 		263.1
(-1.4) 		222.6
(-2.7) 		213
(-3) 		186
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 107
1 2 3 4 range
A 159.2
(3)
P 		52.2
(-3)
P 		78
(-1.6)
P 		62.5
(-2.4)
P 		107
B 142.7
(3)
P 		75.7
(-1.5)
P 		53.6
(-3)
P 		89.2
(-0.6)
P 		89
C 136.8
(3)
P 		63.8
(-3)
P 		88.4
(-1)
P 		83.9
(-1.3)
P 		73
avr 146.2
(3) 		63.9
(-3) 		73.3
(-2.3) 		78.5
(-1.9) 		82

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 110
1 2 3 4 5 6 range
A 58.8
(-2.1)
P 		112
(3)
P 		54.1
(-2.5)
P 		71.2
(-0.9)
P 		77.9
(-0.2)
P 		49
(-3)
P 		63
B 109.2
(1.9)
P 		123.3
(3)
P 		46.3
(-3)
P 		60.3
(-1.9)
P 		105.2
(1.6)
P 		85.8
(0.1)
P 		77
C 95.5
(-0.4)
P 		155.9
(3)
P 		63.8
(-2.2)
P 		56.5
(-2.6)
P 		48.8
(-3)
P 		69.5
(-1.8)
P 		107
avr 87.8
(-0.4) 		130.4
(3) 		54.7
(-3) 		62.7
(-2.4) 		77.3
(-1.2) 		68.1
(-1.9) 		76
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190633_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11953
Sequence Type Exemplar sequence
Representative Public ID C35A5.7 NCBI
Target Description C35A5.7 /REP_DB=WormBase Gene ID /WP=CE05365 /TR=Q18475 /GB=CAA94909.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=transmembranous domains
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073296(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073296 NCBI Caenorhabditis elegans C35A5.7 (C35A5.7) mRNA, complete cds. 11/11 None
SNAP00000025029 ENSEMBL cdna:SNAP chromosome:CEL140:V:10513266:10515041:-1 11/11 None
GENEFINDER00000025047 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:10513266:10516590:-1 11/11 None
C35A5.7 ENSEMBL cdna:known chromosome:CEL140:V:10513266:10516952:-1 gene:C35A5.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:10513265-10516578(-) 100.0 100.0
Public Domain and Genome References
Gene Title transmembranous domains
Ensembl C35A5.7
Entrez Gene 183225 Entrez gene
SwissProt Q18475 EMBL-EBI
WormBase CE31892 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7186 G-protein coupled receptor protein signaling pathway inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
1584 rhodopsin-like receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA94909 Hypothetical protein C35A5.7 [Caenorhabditis elegans] ref|NP_505697.2| C35A5.7 [Caenorhabditis elegans] 0.0
blast CAE64832 Hypothetical protein CBG09628 [Caenorhabditis briggsae] 0.0
blast CAE64832 Hypothetical protein CBG09628 [Caenorhabditis briggsae] 1.0E-177
blast CAE64634 Hypothetical protein CBG09395 [Caenorhabditis briggsae] 2.0E-55
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505697.2 7 26-48,61-83,103-125,149-171,216-238,262-284,299-321
C35A5.7 7 26-48,61-83,103-125,149-171,216-238,262-284,299-321
SNAP00000025029 4 5-27,69-91,115-137,152-174
GENEFINDER00000025047 6 96-118,138-160,181-203,248-270,294-316,331-353
Sequence
Target Sequence 
>C. ELEGANS:190633_AT
gatgtgatggatgtcctctcgttgctcaattctgccgttaacttcatcatttattgtgca
atgagtcggaagttccgagccgtatttatccagatattccttacatgcttgccacaaaaa
attatacgaaaatacgcaatggaagcattcctggacgttgaagtatctcgcatgagacct
actgctgatatgacaaaaagtgaacaattggcattaacgtcacaccgagtttcagcgtcc
tccgttcttttacctatttctagacctgatccacccagaatgtattctggaaatctgctt
acagctgacatcaacggcggatactctacatctcctcgtgtttcctttgatatcgttcgt
aaagaatcgcagatcagtagcgtcgtcgatttccaacttgtggtaccaaatatgcagcaa
gactccctaagcattgttcaaaaaattctcagatttttccgttctacagatgagctttcc
aatagtccacaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATGTGATGGATGTCCTCTCGTTGC 93 409 976 Antisense
GCTCAATTCTGCCGTTAACTTCATC 49 303 999 Antisense
AGTTCCGAGCCGTATTTATCCAGAT 332 65 1046 Antisense
CCAGATATTCCTTACATGCTTGCCA 61 273 1065 Antisense
ATCTCGCATGAGACCTACTGCTGAT 539 33 1140 Antisense
TAACGTCACACCGAGTTTCAGCGTC 673 637 1190 Antisense
TACCTATTTCTAGACCTGATCCACC 546 649 1226 Antisense
TCAACGGCGGATACTCTACATCTCC 154 631 1286 Antisense
TCTCCTCGTGTTTCCTTTGATATCG 197 611 1306 Antisense
TCAGTAGCGTCGTCGATTTCCAACT 137 623 1349 Antisense
GATGAGCTTTCCAATAGTCCACACA 365 411 1444 Antisense
Sequence Source Affymetrix Proprietary Database