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[190632_at] Yeast ORF YCS7_YEAST

Description B0285.6 /REP_DB=WormBase Gene ID /WP=CE00645 /TR=SW:P46556 /GB=CAA84299.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=Yeast ORF YCS7_YEAST
Cluster 6grp_highest_10_10 > 42      6grp_high1_10_10 > 25      4grp_highest_8_8 > 59      4grp_high_8_8 > 33      6grp_highest_nonorm > 90      6grp_total > 14      4grp_total > 38      6grp_highest_sub > 02      6grp_high1_sub > 01_02      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 138
1 2 3 4 range
A 240.8
(3)
P 		158.9
(-3)
P 		197.9
(-0.1)
P 		161
(-2.8)
P 		82
B 247.8
(3)
P 		159.5
(-3)
P 		184.4
(-1.3)
P 		230.8
(1.8)
P 		88
C 261
(3)
P 		248.7
(2.5)
P 		122.9
(-3)
P 		162.6
(-1.3)
P 		138
avr 249.9
(3) 		189
(-1.5) 		168.4
(-3) 		184.8
(-1.8) 		82

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 172
1 2 3 4 5 6 range
A 226.3
(3)
P 		187.5
(1.3)
P 		124
(-1.6)
P 		104.1
(-2.5)
P 		126.5
(-1.5)
P 		92.9
(-3)
P 		133
B 197.2
(3)
P 		179.8
(2.1)
P 		123
(-0.8)
P 		159
(1.1)
P 		78.6
(-3)
P 		82.8
(-2.8)
P 		119
C 161.4
(1)
P 		216.5
(3)
P 		127.7
(-0.3)
P 		155.3
(0.7)
P 		53.9
(-3)
P 		105.8
(-1.1)
P 		163
avr 195
(3) 		194.6
(3) 		124.9
(-0.9) 		139.5
(-0.1) 		86.3
(-3) 		93.8
(-2.6) 		109
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 64
1 2 3 4 range
A 87.7
(3)
P 		34.5
(-2)
P 		51.7
(-0.4)
P 		23.6
(-3)
P 		64
B 79
(3)
P 		39.4
(-3)
P 		42.7
(-2.5)
P 		49.2
(-1.5)
P 		40
C 86.4
(3)
P 		71.5
(1.5)
P 		42.8
(-1.4)
P 		27.4
(-3)
P 		59
avr 84.4
(3) 		48.5
(-1.2) 		45.7
(-1.6) 		33.4
(-3) 		51

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 51
1 2 3 4 5 6 range
A 41.7
(-0.4)
P 		66.7
(3)
P 		27
(-2.4)
P 		26.4
(-2.5)
P 		38.2
(-0.9)
P 		22.6
(-3)
P 		44
B 68.6
(3)
P 		59.9
(1.7)
P 		29.9
(-3)
P 		42.1
(-1.1)
P 		31.9
(-2.7)
P 		30.9
(-2.8)
P 		39
C 59.8
(2.2)
P 		66.1
(3)
P 		32.5
(-1.1)
P 		31.2
(-1.3)
P 		17.4
(-3)
P 		35.4
(-0.8)
P 		49
avr 56.7
(1.7) 		64.2
(3) 		29.8
(-2.9) 		33.2
(-2.3) 		29.2
(-3) 		29.6
(-2.9) 		35
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190632_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7368
Sequence Type Exemplar sequence
Representative Public ID B0285.6 NCBI
Target Description B0285.6 /REP_DB=WormBase Gene ID /WP=CE00645 /TR=SW:P46556 /GB=CAA84299.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=Yeast ORF YCS7_YEAST
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065476(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065476 NCBI Caenorhabditis elegans B0285.6 (B0285.6) mRNA, complete cds. 11/11 None
SNAP00000026085 ENSEMBL cdna:SNAP chromosome:CEL140:III:4350082:4354964:1 9/11 None
GENEFINDER00000026098 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:4352702:4356602:1 11/11 None
B0285.6 ENSEMBL cdna:known chromosome:CEL140:III:4352215:4355943:1 gene:B0285.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:4352483-4355857(+) 98.9 100.0
Public Domain and Genome References
Gene Title Yeast ORF YCS7_YEAST
Ensembl B0285.6
Entrez Gene 175563 Entrez gene
SwissProt P46556 EMBL-EBI
WormBase CE28526 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.16457.1.S1_S_AT similar to Solute carrier family 13, member 3 (Sodium-dependent high-affinity dicarboxylate transporter 2) (Na(+)/dicarboxylate cotransporter 3) (NaDC-3) (hNaDC3) cfa
CANINE_2:CFAAFFX.16553.1.S1_AT similar to Solute carrier family 13, member 3 (Sodium-dependent high-affinity dicarboxylate transporter 2) (Na(+)/dicarboxylate cotransporter 3) (NaDC-3) (hNaDC3) cfa
CHICKEN:GGA.8025.1.S1_AT similar to sodium-dependent high-affinity dicarboxylate transporter gga
CHICKEN:GGAAFFX.2708.1.S1_AT similar to sodium-dependent high-affinity dicarboxylate transporter gga
HG-U133_PLUS_2:205244_S_AT solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 3 hs
HG-U133A:205244_S_AT solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 3 hs
HG-U133A_2:205244_S_AT solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 3 hs
HG-U95AV2:41368_AT solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 3 hs
HU35KSUBB:RC_T56713_AT solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 3 hs
HU35KSUBB:RC_N59894_AT solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 3 hs
HU35KSUBB:RC_H18950_AT solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 3 hs
U133_X3P:G12383071_3P_A_AT solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 3 hs
U133_X3P:HS.102867.1.S1_3P_AT solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 3 hs
U133_X3P:HS.102867.0.S2_3P_AT solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 3 hs
HG-U133A_2:205243_AT solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 3 hs
HG-FOCUS:205243_AT solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 3 hs
HG-U133_PLUS_2:205243_AT solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 3 hs
HG-U133A:205243_AT solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 3 hs
HG-U133_PLUS_2:230686_S_AT solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 3 hs
HG-U133B:230686_S_AT solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 3 hs
HG-U133_PLUS_2:230687_AT solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 3 hs
HG-U133B:230687_AT solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 3 hs
HG-U95B:57986_AT solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 3 hs
HG-U133_PLUS_2:231208_AT Solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 3 hs
HG-U133B:231208_AT Solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 3 hs
HG-U133_PLUS_2:231217_AT Solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 3 hs
HG-U133B:231217_AT Solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 3 hs
U133_X3P:HS.202494.0.S2_3P_AT Solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 3 hs
U133_X3P:HS.202494.0.S1_3P_AT Solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 3 hs
HG-U133_PLUS_2:240910_AT Solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 3 hs
HG-U133B:240910_AT Solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 3 hs
HG-U95D:71607_AT Solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 3 hs
HG-U95D:80041_AT Solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 3 hs
HG-U95E:86641_R_AT Solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 3 hs
U133_X3P:HS.216640.0.A1_3P_AT Solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 3 hs
MOE430A:1438377_X_AT solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 3 mm
MOUSE430A_2:1438377_X_AT solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 3 mm
MOUSE430_2:1438377_X_AT solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 3 mm
MG-U74BV2:107593_AT solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 3 mm
MOE430A:1439384_AT solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 3 mm
MOUSE430A_2:1439384_AT solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 3 mm
MOUSE430_2:1439384_AT solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 3 mm
MOE430A:1416560_AT solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 3 mm
MOUSE430A_2:1416560_AT solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 3 mm
MOUSE430_2:1416560_AT solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 3 mm
MOE430A:1439385_X_AT Solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 3, mRNA (cDNA clone MGC:28679 IMAGE:4238769) mm
MOUSE430A_2:1439385_X_AT Solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 3, mRNA (cDNA clone MGC:28679 IMAGE:4238769) mm
MOUSE430_2:1439385_X_AT Solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 3, mRNA (cDNA clone MGC:28679 IMAGE:4238769) mm
MU19KSUBC:TC38294_AT Solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 3, mRNA (cDNA clone MGC:28679 IMAGE:4238769) mm
RG-U34A:RC_AA892616_AT solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 3 rn
RAE230A:1368047_AT solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 3 rn
RAT230_2:1368047_AT solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 3 rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6814 sodium ion transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5215 transporter activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA84299 Hypothetical protein B0285.6 [Caenorhabditis elegans] ref|NP_497877.1| B0285.6 [Caenorhabditis elegans] sp|P46556|YKG6_CAEEL Hypothetical protein B0285.6 in chromosome III 0.0
blast T18694 hypothetical protein B0285.6 - Caenorhabditis elegans 0.0
blast CAE71221 Hypothetical protein CBG18085 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001898 EMBL-EBI Sodium/sulphate symporter 2.6E-12
Pfam IPR001898 EMBL-EBI Sodium/sulphate symporter 1.2E-17
Pfam IPR001898 EMBL-EBI Sodium/sulphate symporter 2.6E-12
Pfam IPR001898 EMBL-EBI Sodium/sulphate symporter 6.3E-16
Pfam IPR001898 EMBL-EBI Sodium/sulphate symporter 3.8E-12
Pfam IPR001898 EMBL-EBI Sodium/sulphate symporter 1.2E-17
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_497877.1 9 57-79,138-160,214-236,254-276,320-339,354-373,452-474,494-516,529-551
B0285.6 9 57-79,138-160,214-236,254-276,320-339,354-373,452-474,494-516,529-551
SNAP00000026085 9 15-34,54-76,135-157,211-233,251-273,317-336,351-370,449-471,491-513
GENEFINDER00000026098 9 9-31,90-112,166-188,206-228,272-291,306-325,404-426,446-468,481-503
Sequence
Target Sequence 
>C. ELEGANS:190632_AT
gacaaaagccgtccatcagttagacaagagccactaattgattgggattgtgtcagaagg
aggtttccatggtcgattattcttttgttaggagctggttttgcaatttcagatgctgtc
agagtgagtggtctctccagtttgatagcctgcagtctaaacagtacaatatctaagatg
ccattttttgtaatgcaaataattctctcaattgttgttgtagtaatgacagaattctca
acaaactcagcaactgcttccatattcattccaatatcattcaaaatggctgaagccgtt
ggagcacatccattgtatttctcaattccaactgcaattggaccatcattctcatttatg
cttccgatggcaactcctgcaaatgcaattgtttatgagacaaaaactattcgaatgatt
gatatggtatcgtgtggagtcttcctgaatatcttttgcattgcgatcaccgct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACAAAAGCCGTCCATCAGTTAGAC 371 365 1069 Antisense
GGAGGTTTCCATGGTCGATTATTCT 344 515 1127 Antisense
TGGTCTCTCCAGTTTGATAGCCTGC 130 553 1197 Antisense
CAGCAACTGCTTCCATATTCATTCC 131 205 1316 Antisense
ATGGCTGAAGCCGTTGGAGCACATC 519 51 1354 Antisense
GGAGCACATCCATTGTATTTCTCAA 160 521 1369 Antisense
GCAATTGGACCATCATTCTCATTTA 546 323 1402 Antisense
CATTCTCATTTATGCTTCCGATGGC 117 217 1415 Antisense
TTCCGATGGCAACTCCTGCAAATGC 391 699 1430 Antisense
GGTATCGTGTGGAGTCTTCCTGAAT 533 505 1494 Antisense
TATCTTTTGCATTGCGATCACCGCT 67 659 1518 Antisense
Sequence Source Affymetrix Proprietary Database